Brassica rapa (field mustard): 103865611
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Entry
103865611 CDS
T03449
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00900
Terpenoid backbone biosynthesis
brp01100
Metabolic pathways
brp01110
Biosynthesis of secondary metabolites
Module
brp_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
103865611
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
brp01006
]
103865611
Enzymes [BR:
brp01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
103865611
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
103865611
2.5.1.29 geranylgeranyl diphosphate synthase
103865611
Prenyltransferases [BR:
brp01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
103865611
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
103865611
NCBI-ProteinID:
XP_009141710
UniProt:
M4D5F2
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All DBs
Position
A01:complement(1005343..1006727)
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AA seq
363 aa
AA seq
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MASSVTLGSCPWVLHHQSKTPRSRSPPFITLKPITLTPKRSVSSSSHTISSSLVTKEDNN
LKSTSSFDFMSYILRKADSVNRALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAAC
ELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDA
LLSFAFEHLASATSSDVSPARVVRAVGELAKAIGTEGLVAGQVADISSEGLDLNDVGLDH
LEFIHLHKTAALLEASAVLGGIVGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQE
LGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAN
RQN
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcagtgactctaggttcatgcccatgggttcttcaccaccaatccaaaaca
cccagatccagatctcctcccttcatcacacttaaacccatcaccctcaccccaaaacgc
agcgtttcgtcttcttcccacaccatttcctcttccctcgtcaccaaagaagacaacaac
ctcaaatccacctcctccttcgacttcatgtcttacatcctccgcaaagccgactccgtc
aacagagccctggactccgccgtccccctccgggagccgctcaagatccacgaggcgatg
cgctactccctcctcgccggcggcaaacgcgtcaggcccgtcctctgcatcgccgcctgc
gagctcgtcggcggggaagagtccctcgccatgccggcggcctgcgccgtcgagatgatc
cacaccatgtcgctgatccacgacgacttgccgtgcatggacaacgacgacctccgccgc
gggaagccgacgaaccacaaggtttacggcgaggacgtggcagttctagccggagacgcg
cttctctccttcgccttcgagcatttagcgtcggccacgagctccgacgtttctccggcg
agggtggtcagagccgtcggagagttggcgaaagctataggaaccgaagggctggtcgct
ggacaagtggcggatataagcagcgaagggttggacttaaacgacgtcggattggatcat
ttggagtttattcatttgcataaaacggcggcgttgcttgaggcttcagccgttttgggt
gggatcgtcggtggagggagtgatgaagagatcgagaggctgaggaagttcgcgaggtgt
atcggtctgttgtttcaggtggttgatgacatcttggacgtgacgaagtcgtctcaggag
ctggggaagaccgccgggaaagatttgatcgccgataagctgacgtatccgaagctcatg
gggttggagaaatcgagagagttcgctgagaagttgaatagagaggcgcgtgatcagctt
ttggggtttgattccgacaaggttgctcctttgttggctttggctaattacattgccaat
agacagaactga
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