Betta splendens (Siamese fighting fish): 114864608
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Entry
114864608 CDS
T08231
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114864608 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114864608 (polr1a)
Enzymes [BR:
bspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114864608 (polr1a)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
114864608 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Nop14
HMG_box_2
SURF2
Motif
Other DBs
NCBI-GeneID:
114864608
NCBI-ProteinID:
XP_029021336
EnsemblRapid:
ENSBSLG00000002233
UniProt:
A0A6P7NN76
LinkDB
All DBs
Position
10:621079..635067
Genome browser
AA seq
1698 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGMYTSEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVDLPLPVYNPLFFDKLYLLIRGSCMACNMLTCPRAAIHLL
LNQLKLVEYGAMQEAYTVEQVLSQYLEENPKATGDEIAEVLREFTDAAVAENTKGLENIK
PIKHLVEKKSSLINDFWKVHMKTRKCPYCRSGRFTVRREHNSKLIVTIPSGIQTSANTDE
LMAGKRVYLTASTARDHINKLWENEGFFLKSLFSGLEGAMTSQDRENSLHPDLFFLELLV
VPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCVVIRKLLALIAGEKTIEEGEVISCLQAP
EETDQSFLSGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKEGL
FRKHMMGKRVDYAARSVICPDMYIGTDEIGIPMVFATKLTYPQPVTPWNVKDLRQAVLNG
PNVHPGASMVINEDGRRTILSATNLAQREAVAKQLLTPCPGPHKMPVKIVNRHIKNGDVL
LLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEA
YTLVSTHQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKTGRV
KLLPPAILKPQQLWTGKQVVSTVLLNVIPQKAVPLNLLGKSKIPCKAWIQVPPRAAPGYK
PDSMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAY
LQLYRGFTLGVEDILVKPGANKRRKKVIEESLKIGTKALLAAFNLPSSVDEAEAQSRWQD
AHLNPDQRDFSMADHKFKELANQVNNDVNKVCMPVGLHTAFPDNNLQLMVQSGAKGSTVN
TMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPALGAGGFVSGRFLTGIKPQEFFFHC
MAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPK
TQFLQPRQFPFIEDNYEVIKRSQGLDKILARLDPRSANQHFAAIQRWKTKRETACPRKGA
FLLFSQKKLAKLKQSELNAHDREAAIMQVLQQWRSLDEAGRSKYTKKSSRCPEPSLGLFR
PDISFGSVSENFHDIAEKYLQDRTETSPDSLDTHSLRQLLHYKWQRALCDPGEAVGLLAA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIRTPMMSVPVLNNRKALK
KAKTLRKKLTRVCLAEVLQKIDVVESLRIETHQKLRTFKVTFHFLPHDRYCDDKMLSPQH
ILHYMETRFFRLLLDAIKKRSSKLASITVEMRKATLRDKDHDDDGAADTAGVDDWEGEEG
REIVDDQGNEGDADASDAKRQDKQEEEVDYESEEEDLGDNTEDKEDQLDEEEEEEDEKGE
NSTLEELLQESVETRMKKKKKQPKQGGAGRGEASLSQIRINSVLESNPAIESYCYDHQHE
LWCEVDMVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSETTTKMGEKEMILNTEG
INMHEMFRHSNILDINRLYCNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLS
LVADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMMGSHDQLVSPSACLVV
GKVVKGGTGLFELKQPLQ
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagaagtgccatggcggcgtttggagggcatgtcgtttggcatgtac
acttcggaagaaataaggaagttgagcgtaaaaaccatcactaacttcaggttcctggat
gctgtcggaaatgtagccccaaacagcctgtatgatctggcccttggaccggcagacagc
aaagaggtgtgttcaacctgctgccaggacttcaacaactgtccaggtcatctggggcat
gtagatttgcctctccctgtatacaacccactcttctttgataaactgtacctgttgatc
cggggttcgtgtatggcatgtaacatgttaacatgtcctcgagcagccatccacctactg
ctaaatcagctgaagttagtggagtatggagccatgcaggaggcctacacagtagagcaa
gttcttagtcagtacctggaggagaatcccaaagccactggggatgagattgcagaggtg
cttagggaatttacggacgcagcagttgcagagaacactaaaggtttggagaacatcaaa
ccaattaaacaccttgttgagaagaaaagcagtctgataaatgacttctggaaggtccac
atgaaaacaagaaaatgtccttactgcaggagtggcaggtttacagtgcgtcgtgaacac
aacagtaagctgattgtcacgattccatcaggaatacagaccagtgccaatactgacgag
ttgatggctggaaagagagtttacctgactgccagcactgccagagatcacatcaacaaa
ctgtgggaaaatgaaggtttctttctgaagagtctgttttccggcctggagggggccatg
acgtcgcaggacagagagaacagtcttcatcctgacttgttcttcctagagctgctggtg
gtcccaccttgcaggtatcggccaatcaatcgactgggcgaccagatgtttacgaatggt
cagacagtcaacatgcaagctgtaatgaaggactgtgtagtcataaggaaacttctggct
ctcattgctggagagaaaactattgaagaaggagaggtaatatcatgtttgcaggctccg
gaagagacggaccagtcatttctttctgggatccctgggcaaaccttaacagataaactc
tacaacatctggattcgactacagacccatgtcaacatagtctttgatagtgacatggac
aaaatgatgacagagaaataccctggaatcagacagattctggaaaaaaaggagggattg
tttcgcaaacacatgatgggcaaacgagtggactatgcagcacgatctgtcatctgtcca
gacatgtacattggaaccgatgagataggaattccaatggtgtttgccaccaagctgacc
taccctcagcccgtcactccttggaatgtgaaggatctgcgtcaggcagtcctcaatggg
cccaacgtccatcctggtgcatccatggtgataaacgaggatggcagaagaaccatccta
tcagcgacaaatttagcccagcgagaagcagtagccaagcagctgctcactccatgtcca
ggtccacataagatgccagtgaagattgtgaaccgtcacataaagaatggagatgtctta
ttacttaacaggcaaccaactttgcacagaccctcaatacaagctcattgtgccagaatc
ctcccaggggagaaggtacttaggctccattatgccaactgcaaggcatacaatgccgac
tttgatggagatgaaatgaatgctcacttccctcagagtgagctgggcagggctgaagca
tacacgttagtcagcactcaccagcagtacctcgtccccaaggacggcaaacctttagca
ggtctgatccaagaccacatggtgtcaggaacaaggatgacgattcgtggctgtttcttc
accagagaccagtacacagagttggtgtacagaggactgactgacaaaacaggcagagtg
aaactgctcccaccggctatactcaaaccacagcagctgtggacaggaaaacaggtggtg
tccactgtcctgctgaatgtgatcccacagaaagctgtgcctcttaatctgcttggcaag
tcaaaaataccctgcaaggcgtggattcaagtcccaccacgtgcagctccaggctacaaa
cctgacagcatgtgtgactcccaggtggtgattcgccagggggagctgttggtgggggtt
ctggataaagcccattacggctcttcagcctacggactcgtccactgttgctacgagctg
tatggaggggagaccagtggcaagttgctcagctgtctggcccgacttttcaccgcttac
ctgcagctatacagaggcttcactctgggtgttgaggatatcctggtaaaaccaggcgcc
aacaaacggaggaagaaagtaattgaagagtctctaaaaattggaaccaaagctcttctg
gctgcattcaacctgccttccagtgtggatgaagctgaggctcagagccgctggcaggac
gcccacctcaacccagaccagagagacttcagtatggccgaccataaatttaaagaactg
gccaaccaagttaacaatgatgtcaacaaggtgtgcatgccagttggactccacactgct
ttcccagacaacaacctccagctgatggtccaatcaggagccaagggatctactgttaac
acgatgcagatttcgtgtctgctgggtcagatagagttggagggccgtagacctcccctg
atgccttctgggaagtttttgccatgcttccagccatatgaccctgcgcttggtgctggg
gggtttgtctctggaaggttcctcacaggcatcaaaccacaggagtttttcttccactgc
atggctggcagggagggactggtggacactgctgtgaaaacatctagatcaggatacctg
cagaggtgtatcatcaagcatttggagggtttggtggtacagtatgatctgactgtgagg
gacagtgatggatctgtggtccagttcctgtacggtgaagacgggttagacatccccaag
actcagtttttgcagccaagacagtttccattcatagaggacaactatgaggtcattaaa
aggtctcagggccttgataagattttggcacgtttggaccctcggtctgccaatcaacac
tttgcagccatccagcgctggaaaaccaagagagagacagcgtgtccacgaaaaggagcg
ttcctgttgttttcccaaaagaaactggccaagctaaaacagtcagagttgaatgcccac
gacagagaagctgcaataatgcaggttctacagcagtggcgctccctggatgaagctggc
aggtcaaaatacacgaagaagtcctcccgctgcccagagccctccctgggcttgtttagg
ccagacatcagttttggttcagtatctgaaaactttcatgacattgcagagaaatacctg
caggatcgaactgagacaagtccagacagcttggatacgcacagccttcgccagttattg
cattacaagtggcagcgggcactgtgcgatccaggtgaagcagtgggtctgctggcagct
cagtctataggagagccctccactcagatgaccctcaacaccttccactttgctggcaga
ggagagatgaacgtcacattaggaatacctcgactgagagagattctaatggtggccagc
tccaacattaggactcctatgatgagtgttccggtgctgaacaacaggaaagccctaaag
aaggccaagaccctgcgtaagaaactcacaagggtgtgtctggctgaggtgctgcagaag
attgatgtggttgagtcgctgcgcattgaaactcaccaaaagctccgtacgttcaaagtc
accttccactttctgcctcatgaccggtactgtgacgataagatgctgtcaccccaacat
attctccactacatggaaacaaggtttttccgtcttctcctcgacgccattaagaagcgc
agctccaagctggcctccatcaccgtggagatgagaaaggctactctcagagataaggac
catgacgatgatggagcagctgacacagcaggggtagatgattgggagggagaagagggc
agagagattgtggacgaccaggggaacgaaggtgatgcggatgcttcagacgccaagaga
caagacaaacaggaagaggaggtggactatgaaagtgaggaggaggacctaggtgacaac
actgaagataaagaagatcagttggatgaagaggaagaggaagaggatgagaaaggggag
aacagcactttagaagagcttctgcaagaatctgtggagacaaggatgaagaaaaagaag
aaacaaccaaaacaagggggggcaggaagaggagaagcatccttgagtcaaataagaatt
aactctgttctggagtccaacccagcaatagagagctactgctacgatcaccagcatgaa
ctatggtgtgaggttgacatggttttgccagtgagcaaggtgcactttgacctgacctca
gtgctctcaacactggcccaaaatgccgtcatcatggaaaccaagggcctgactcgctgc
ctgctgagtgaaaccacaacaaagatgggagagaaagaaatgattcttaacacagagggc
atcaacatgcatgaaatgttcagacacagcaatatcttggacatcaacagactgtactgc
aatgaggttcatgccatggctaaaacctatgggattgaagtggctcttaaggtcatagag
aaggagatcaaggatgtatttgctgtctatggtattgaggtggaccccagacatctgtca
ttggtggcagactacatgtgttttgaaggtgtatataagccattgaaccggcacgccatc
aggtccaactcatcccctctgcagcagatgacctttgagaccagctacaaattcctcaaa
caggctacaatgatggggtcgcatgatcagttggtctccccatcagcctgcctggtggtg
gggaaggtggttaagggtggaacaggcctgtttgaactcaaacaacctctgcagtag
DBGET
integrated database retrieval system
