Bos taurus (cow): 535956
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Entry
535956 CDS
T01008
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
bta
Bos taurus (cow)
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bta04040
]
535956 (SCN11A)
Ion channels [BR:
bta04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
535956 (SCN11A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
535956
NCBI-ProteinID:
XP_015314976
BGD-bta:
BT25736
Ensembl:
ENSBTAG00000017174
VGNC:
34344
LinkDB
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Position
22:complement(12235887..12325469)
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AA seq
1785 aa
AA seq
DB search
MDDRCYPVIFPDGRNFRPFTPDSLAAIKKRIAIQKEKNKSKDRKAAECEPRPQLDLKVSR
KLPKLYGDIPRDLIAKPLEDLDPFYHNHKTFMVLNKKRTIYRFSAKRALFILGPFNSIRS
LAIRISVHSLFSMFIICTVIINCVFMALAHQKSSIDVKTDHAEYVFLGIYLFEALVKILA
RGFILDEFSFLRDPWNWLDSIVIATAFVSYSPYINDSSFSLSSLRTFRVFRALKAISVIS
GLKVIVGALLHSVKKLVDVMILALFCLSIFALVGQQLFMGNLRYKCVSNSCKHHYQDYYQ
DYCFKKEESTEFKMCGMWMGNRACPEQYECRDSHKNPDYNYTNFDNFGWSFLAMFRLMTQ
DSWEKLYRQTVRTSGLISVLFFVVVIFLGSFYLVNLTLAVVTMTYEEQNKNVAAETEAKE
KMFQEAQQLLKEEKEALVAMGIDRSSLNSLEASSFSPKKRKLFGSKKRKSFFLRKSGKDQ
IPGSDSDEDSSKKPHLLEQTKRLSQNLSVDHCDEHGDSFQRQRALSAVSILTITMQEQEK
SQEPCLPCGENLASRYLVWDCSPWWLDIKKVLRTVMTDPFTELAITICIIINTVFLAMEH
YKMDQNFENILYTGNLVFTGIFMAEMCLKIIALDPYHYFRRGWNIFDSVVALLSLADVIL
NHIVSGKSWISFRSLRVLRVFKLAKSWPTLSTLIKIIGHSVGALGNLTVVLAIVVFIFSV
VGMQLFGSKFNNRKNNLKSCDPEVLCLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQE
ANPTLCVIVFLSIMVIGKLVVLNLFIALLLNSFSNEERNGHLEGKVKKTKIQIALDRFCR
AFCFVIHTLEHFFRKHCRKRHLSKQKEVTEDPGGKIKDIIPLVTGMRKGPEIWEEFGVLT
SVPMALYDRTWLAPLAEEEDDAEPPGEDKAQAVTQPEAGKQCQASEVHQKSKDLTSPGIQ
SVEIDLFSGDDPPMSIQNLRKKSDAASVLSECSTIGPQDPFMRVLEMIPKKEPERCLPEG
LNCCSLCHTVDKRKSSWITWWSLRKICYQIVKHSWFESFIIFVILLSSGALVFEDINLDK
QPKIQELLKCTDTIFTYIFILEMGLKWVAFGFRKYFTSVWCWLDFVIVIVSVTSLIDLMG
LKSFRILRALRPLRALSQFEGMKVVVYALIGAIPAILNVLLVCLIFWLIFCILGVSLFSG
RFGRCVNATDVKSVIDYNIVANRNQCESGHFYWDTPDVNFDNVLMAYLALLQVATFKGWM
DIMYAAVDSTEEGQQPQFEARSSMYLYFVVFIIFGSFFTLNLFTGVIIDNFNQQQKKISG
QDVFLTEEQKKYYNAMKKLGSKKPQRPIPRPQNKCQGFVFDLVTHQVFDIIIIILILLNM
LSMMAETHKQSETMKHLLESLNMAFVVIFAIECFIKIFALRQYYFANGWNLFDCVIVLLS
IVSSVVSALKTQAQIPFPPTLFRMVRLVRIGRILRLVRAARRIRTLLFALMMSLPSLFNI
GLLLFLVMFIYAIFGMNSFRKVKEESGIDDIFNFQTFTSSMLCLFQITTTAGWDALLSPM
LKSNKSCDPKTESCHLSTIAIIYFVTYIIISSLIVVNMYIAVILENFNVATEESEDPLGE
DDFEMFYEVWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSGERL
HCLDILFAFTTRVLGESSGLDSMKAAIEEKFMEANPFKKLYEPIVTTTKRNEEERCAAAV
IQKAFRKYMLKTRCTLKDRPHSTLQTLSNGDLPSSGVAEGKVHYD
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggtgctacccagtgatctttccagatgggaggaatttccgccccttcact
cctgactctttggctgcaatcaagaagcggatcgccatccaaaaggagaaaaataagtcc
aaagatcggaaagcagcagaatgcgagcctcgacctcaacttgacctaaaggtctccaga
aagttgcccaagctttatggtgacattccccgtgacctgatagcaaagcccctagaagac
ctggacccattctaccacaatcataagacatttatggtgttgaacaaaaagagaacaatc
taccgcttcagcgccaaacgtgccttgttcattttggggcctttcaattcaatcagaagt
ttggccattagaatctcagtccattcgttgttcagcatgttcatcatctgtactgtcatc
atcaactgcgtgttcatggccttggctcatcagaagagcagcattgatgtgaaaactgac
catgctgagtatgtcttccttgggatttatttatttgaagcattagttaaaatattggca
agaggttttattctggatgagttttctttcctgcgagatccgtggaactggctggactcc
attgtcattgcaacagcatttgtatcatattctccatatatcaatgacagcagcttcagt
ctgtcatccctgcgtaccttccgagtattcagagctttgaaagcaatttcagtaatttca
ggtttgaaggtcattgttggggccttgctgcactctgtgaagaagcttgtcgatgtgatg
atcctggctctcttttgcctcagcatcttcgccctggtaggtcagcagctcttcatggga
aatctgaggtacaaatgtgtcagtaattcctgtaaacatcactatcaagattactatcaa
gactattgctttaaaaaggaagagtccactgaattcaaaatgtgtggcatgtggatgggc
aacagggcttgtcctgaacaatatgaatgcagagatagccacaaaaatcctgactataac
tacacaaattttgacaactttggctggtcttttcttgccatgttccggcttatgacccaa
gattcctgggagaagctttatcgacagactgtgcgtacctcagggctcatctcggtcctc
ttctttgtggtggtcatcttcctgggctctttctacttggttaacttaaccctggctgtt
gtcaccatgacttatgaggaacagaacaagaatgtagctgctgaaacagaagccaaggag
aagatgtttcaggaagcccagcagctgttgaaggaggagaaggaggctctggttgccatg
ggaattgacagaagttcacttaattcccttgaagcatcatctttttccccaaagaagaga
aagctatttggtagtaagaaaagaaaatccttctttttaagaaagtctgggaaagaccag
attccaggatcagattctgatgaagattcttcaaaaaagccacacctccttgagcaaacc
aaacgactgtcccagaatctgtcagtggaccactgtgatgagcacggagactccttccaa
aggcagagagcgctgagtgctgtcagcatccttaccattaccatgcaggaacaagaaaaa
tcacaggagccttgcctcccatgtggggaaaatctggcatccagatacctcgtgtgggac
tgtagcccctggtggctagacattaagaaggtcctgagaaccgtgatgactgatcccttt
actgaactggccatcaccatctgcatcataatcaacactgtcttcttggccatggagcat
tacaaaatggaccagaattttgagaatatattgtacacagggaacttggttttcactggc
attttcatggctgaaatgtgcctaaaaatcattgcgctggatccctaccactactttcgt
cgaggatggaacatttttgacagcgttgttgctcttctgagtttggcagatgtgatatta
aaccatatagtttcaggaaaaagttggatatcatttcgttccttaagagtgctgagggtc
ttcaagttagccaaatcctggccaactttaagcacactgattaagatcattggccattct
gttggagcccttggaaacctgactgtggtcttggccattgtggtctttattttctcagta
gttggcatgcagcttttcggctctaaattcaataacagaaagaataatttaaagtcctgt
gaccctgaagtcctgtgtttacggcgctggcacatgggggatttctaccactcctttttg
gtggtgttccgcatcctctgtggcgaatggattgaaaacatgtgggaatgcatgcaagaa
gctaacccaacgctgtgcgttattgtgtttctgtcgatcatggtgattggaaaacttgtg
gtactcaacctcttcattgccttgctactcaattccttcagcaatgaggagagaaatgga
cacttggagggaaaagtcaagaaaaccaaaatccagatagccctggatcggttctgccgg
gctttttgttttgtaatacatactcttgagcattttttcaggaagcattgcaggaagcga
catttatcaaagcaaaaagaggtgacagaagaccctggtggaaagatcaaagatatcatt
cccctggtcacagggatgagaaagggcccagagatctgggaggagtttggcgtactaact
tctgtaccaatggccttgtatgatcggacttggttggccccacttgcagaggaagaagat
gatgctgaaccccctggtgaagataaggcacaggctgtcacacaacctgaggctggaaaa
cagtgtcaggccagcgaagtccatcagaagagcaaggatctcactagtccaggaattcag
agtgtggaaattgatctattctctggagatgatcctcctatgtcaatacagaatcttcgg
aagaagtctgatgctgcgagtgtgctctcagaatgtagcaccattggtccacaggatccc
tttatgcgggtacttgaaatgattcccaaaaaggaaccagagaggtgtttgcccgaaggc
ctgaattgctgctctctatgccatactgtggacaagagaaagtcctcctggatcacttgg
tggagcctgcgaaaaatctgctaccaaatagtgaaacacagctggtttgagagctttatt
atctttgtgattctgctgagcagtggggcactggtatttgaagatattaaccttgataaa
caacccaaaatccaagaattacttaaatgtactgacactattttcacatacatttttatc
ttggagatgggtctgaaatgggtggcctttggatttaggaaatatttcacaagtgtctgg
tgctggctcgacttcgtcattgtgattgtctctgtgaccagtctcatcgacttaatgggc
ttgaagtccttccggattcttcgagcactgaggcccctgcgagcactgtcccagtttgaa
ggaatgaaggtggtagtttatgctctcataggtgccatacctgctattctgaatgttttg
cttgtctgcctcattttctggctcatattttgtatcctgggagtaagtctgttttctgga
agatttggaagatgtgttaatgcaacagatgtaaaatcagttatagattataacattgtt
gcaaaccgtaatcaatgtgaaagtggacatttctattgggacaccccggatgtcaacttt
gacaacgtgttaatggcttaccttgcgctactgcaagtggcaacatttaagggctggatg
gatattatgtatgcagctgttgattccacagaggaaggacaacagccacagtttgaggca
cgttcttccatgtacctttacttcgtagtttttatcatctttggctcattcttcactctg
aatctctttactggtgttattattgacaacttcaaccaacagcagaaaaagataagtggc
caagatgtctttctgacagaagaacagaagaaatactataatgcaatgaaaaaattagga
tccaaaaaacctcaaaggcccattccaaggcctcagaacaaatgccaaggctttgtgttt
gacctcgtcacacaccaggtctttgacatcattatcatcatcctcattctcctcaacatg
cttagcatgatggctgaaacacataagcagtcggagaccatgaaacatttacttgagagt
ctcaacatggcctttgtggtcatctttgcaattgagtgtttcatcaaaatctttgctttg
aggcaatactacttcgccaatggctggaatttatttgattgtgtgatcgtgctcctttct
attgttagttccgtggtttctgccttgaaaacccaggcccagattcctttccctccaaca
ctgttcagaatggttcgcttggttcggattggccgaatcctgagacttgttcgagcagca
cgaagaatcagaactctgctttttgctctgatgatgtccctgccctctctatttaatatt
ggtcttctcctctttctggttatgtttatttatgccatttttggtatgaactcttttcga
aaagtgaaggaagagtctggaatcgatgacatcttcaacttccaaacttttacaagcagc
atgctctgcctcttccagataaccacgacagcaggctgggatgccctcctcagccccatg
ttgaaatcaaacaagtcctgtgaccccaagacagagagctgccacctctctaccatagcc
ataatctacttcgtcacttatatcatcatctcctctctcattgtggtcaacatgtatatt
gctgtgattttagaaaacttcaatgtagccactgaagaaagtgaggaccctttgggtgaa
gatgactttgaaatgttctacgaagtctgggaaaagtttgacccagaagcaacacaattt
atcaaatattctgccctttctgactttgctgatgcccttcctgagcctctgcgtgtggca
aagccaaataaataccaatttttagtcatggacttgccaatggtgagtggagagcgtctc
cattgcttggatattctcttcgctttcaccacgagggtacttggtgagtccagtggcctg
gatagcatgaaagcagcaatagaagagaagttcatggaggccaaccctttcaagaagtta
tatgaacccatagtcaccaccaccaaaaggaatgaagaggaaagatgtgctgctgctgtt
attcaaaaggcctttcgaaagtacatgctgaagaccaggtgtaccttgaaagacaggcct
cattcaaccctccagacactctccaatggagacttacccagctctggggtggccgagggc
aaggtccattatgactga
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integrated database retrieval system
