Bombus terrestris (buff-tailed bumblebee): 100645103
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Entry
100645103 CDS
T04364
Name
(RefSeq) LOW QUALITY PROTEIN: protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100645103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bter03019
]
100645103
Enzymes [BR:
bter01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100645103
Messenger RNA biogenesis [BR:
bter03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100645103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
ATP_bind_1
AAA_16
AAA_22
MMR_HSR1
nSTAND3
CTV_P13
Motif
Other DBs
NCBI-GeneID:
100645103
NCBI-ProteinID:
XP_012173307
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All DBs
Position
LG B16:3925616..3928070
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AA seq
438 aa
AA seq
DB search
MSNPNEDLFHASNHNPNHNGKHDIKEFKLDPDCELRFEVETKNEKVSLELKSGLAEVFGT
ELVKGKKYEFTAGAKVAVFTWQGCTVELVGKTDVSYVAKETPMGLYLNCHAAMERLREAA
EKEDTRGPITMVVGPCDVGKSTLCRLLLNYAVRMGRRPIFVDLDVGQGHIAIPGTVGALL
VERPSNVVDGFSQQAPLVFHFGHKTPQANVALYNLLVTRLAEVCSDRLQANKKXRVSGIV
INTCGWVKGDGYKLLTHAAQAFEVDAILVLDQERLYNELVRDMPDFVKVVFLPKSGGVVE
RSQTQRTEARDQGVREYFYGSRTPLYPHSFEVKWSEARLYKIGAPVLPASCMPLGMKAED
NLTKLVAVTPGPNLLHHLLSVSFADSPEDDVVQTNVAGFVCVTNVDVDRQTFTVLSPQPR
PLPNTVLLLSDIQFMDSH
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatccaaatgaagatttgtttcatgcctctaatcataaccctaatcataacggt
aaacatgatataaaggaatttaaattagatccagattgtgaattacgatttgaagttgaa
acaaaaaatgaaaaagtttcgttagagttaaagagtggattagctgaagtttttggtaca
gaattagtgaaaggcaaaaaatatgaatttactgctggtgctaaagtagctgtatttact
tggcaaggttgtacagtagagttagttggaaaaactgacgttagttatgtagccaaagag
accccaatgggtctttatttaaattgtcatgctgcaatggaaagactcagggaagctgca
gagaaagaagacactaggggtcctataacaatggttgttggtccttgtgatgtaggaaaa
tcaactctatgtagacttttattaaattatgcagttaggatgggtcgtaggccaattttt
gtagacttggatgttggtcaaggtcatatagcaataccaggtactgttggagcactatta
gttgaacgtccatcaaatgttgttgatggtttcagtcagcaggcaccattagtctttcac
tttggacataaaactccacaagctaatgttgctctttataatcttcttgtaacacgcctc
gcagaagtttgttctgatagacttcaagcaaataaaaagnccagagtttcaggaatagta
ataaacacttgtggttgggtaaaaggagatggatataaattgttgacacatgctgctcag
gcttttgaagtagacgcaattctagtattggatcaggagagattgtacaatgaacttgtt
agagatatgccagactttgttaaagttgtattccttccaaaaagtggtggagttgtggaa
agaagtcaaactcaaaggacagaagccagagaccaaggtgtcagggaatatttctatggt
tctaggacaccactttatccacacagttttgaagtgaaatggagtgaggctagattatac
aaaattggagctccagtgcttcctgcatcttgtatgcctcttggaatgaaggcagaagat
aatttaacaaaattagtagctgttacacctggaccaaatcttcttcatcatctattatct
gtttcatttgctgattcaccagaagatgacgtagtgcaaactaatgtggctggatttgtc
tgcgtaaccaatgttgatgttgacagacaaacatttacagttctgagtccacagccaaga
ccattgccaaatacagttttattactttcggatatacaatttatggatagtcattaa
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