Chelonoidis abingdonii (Abingdon island giant tortoise): 116833199
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Entry
116833199 CDS
T07367
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03020
RNA polymerase
cabi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116833199
09124 Replication and repair
03420 Nucleotide excision repair
116833199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cabi03021
]
116833199
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116833199
Enzymes [BR:
cabi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116833199
Transcription machinery [BR:
cabi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116833199
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116833199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
116833199
NCBI-ProteinID:
XP_032650434
Ensembl:
ENSCABG00000013561
LinkDB
All DBs
Position
Unknown
AA seq
1937 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIEKTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPDGDEDLTKEKGH
GGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMEPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADVVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVPGIDR
EAQQRAEPTPQQTLRQTLRTRVNRILNDAGDKTRSSRPGALSEYKQLQIHGVSGGQGLQD
NISQVGAVGGQQNVEGSLPIWVQHRTTCPTSQGRYGQERSGFVENSYXAGLTPTEFFLPR
MGGSRGPHRTRLSSTETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINARLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVRGLCRLGGDRTGL
GLPQGTLGNLARARGQECDSWSWPAPGQSGFSRTTSVTSCPKLLSWVLSPALGREWGLVV
RAGWRPCSIWARCWPQQRGPLAKGAPVTSPQVLGIEAVRKALERELYHVISFDGSYVNYR
HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSE
NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGVGVPTGMFFGSAPSPMGGMSPA
MTPWNLGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG
PSSPYVPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYS
PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSP
SYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKGSTYSPTSPGYSPTSPT
YSLTSPAISPDDSDEDN
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcccgccctccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
cagttcggcatcctcagccccgatgagatgaaacggatgtcggtgacggagggagggatc
aagtaccccgagacaacggaggggggccgccccaagctagggggcttgatggacccccgg
caaggagtgatcgagaagacgggccggtgccagacatgtgcagggaacatgaccgagtgc
ccaggccacttcggccacattgagctggccaagcccgtcttccacgtgggcttcttgggg
aagaccatgaaggtgctgcgttgcgtctgcttcttctgctccaagctgctggtggattcg
aacaacccgaaaatcaaggacatcctgggcaagtccaaggggcagcccaagaagcgcctg
acccatgtctacgacctttgcaaaggcaagaacatctgtgaaggtggggaggaaatggac
aacaagttcggggtggagcagccggacggcgacgaggacctgaccaaggagaagggtcac
ggcggctgtgggcggtaccagccccgcatccggcgcaccgggctggagctctacgccgag
tggaaacacgtcaatgaggactcgcaggagaagaaaatcctgctcagccccgagcgggtg
cacgagatcttcaagcgcatctcagacgaggagtgtttcattctgggcatggagcccaag
tacgcccggcccgagtggatgatctgcactgtcctgcctgtgcccccactctctgtccgg
cccgccgtggtcatgcagggctcggccaggaaccaggacgatctgacccacaagctggcg
gacgtggtgaagatcaacaaccagctgcggcgcaacgagcagaacggggcggctgcccac
gtcatcgccgaggatgtcaagttgctgcagttccatgtggccaccatggtggacaacgag
ctgcctggcctgccccgggctatgcagaaatcggggcgtcccctcaagtccctgaagcag
cggctgaaggggaaagaggggcgcgtgcgggggaacctgatgggaaagcgggtggatttc
tctgcccggacggtcatcacgccggaccccaacctctctatcgatcaggtgggggtgccc
cgctccattgccgccaacatgaccttcgccgagattgtcacgcccttcaacatcgacagg
ctacaggaactggtacgcaggggtaacagccagtacccgggggccaagtacatcatccga
gataacggcgaccgcattgacctgcgcttccaccccaagcccagtgacctccacctgcaa
attggctacaaggtggagcgacatatgtgcgacggggacatcgtgatcttcaaccggcag
cccacgctgcacaagatgtccatgatggggcaccgagtacgaatcctgccctggtccact
ttccgcctcaacctcagcgtgaccaccccctacaacgctgacttcgacggggacgagatg
aacctccacctgccccaatcgctggagacgcgggcggagatccaggagctggctatggta
ccccgcatgatcgtcaccccccagtccaaccggcccgtcatgggcatcgtgcaggacacc
ctcacggccgtccgcaagttcaccaagcgcgatgtcttcctggagcggggcgaggtgatg
aacctgcttatgttcctgtccacgtgggacggcaaggtgccccagccggccatcctcaaa
ccccgcccgctctggacgggcaaacagatcttctccctcatcatcccgggccacatcaac
tgcatccgcacgcacagcacccaccccgacgacgaggacagcgggccctacaagcacatc
tcgcccggcgacaccaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgt
aagaaatcactcggcacctcggcgggctccctcgtccacatctcctatctggagatgggc
cacgacaccacccgcctcttttacagcaacatccagacggtcatcaacaactggctgctc
atcgagggtcacaccatcggcattggggactccatcgctgacgcaaagacctatcaggac
attcagaacaccatcaagaaagccaagcaggacgtcatagaggtaccagggattgatcga
gaggcacaacaacgagctgagcccacgccgcaacaaacgctgcggcagaccttaagaacc
agggtgaaccgcatcctgaacgacgccggcgacaagacccgctcctcccgcccaggagcc
ctgtccgagtacaagcaacttcaaatccatggggtgtccgggggccaagggctccaagat
aacatctcccaggtgggcgctgtgggtgggcagcagaacgtggagggaagcctccccatt
tgggtacagcaccgcacaacgtgccccacttctcaaggacgatacggccaagagaggtcg
ggcttcgtggagaactcctacntggccggcctgacgcccactgagttctttcttccacgc
atgggcggcagccgagggcctcatcgaacacggctgtcaagcaccgagaccgggtacatc
cagcggcggctgatcaaatccatggagtcggtaatggtgaaatacgacgccaccgtgcgc
aactccatcaaccaggtggtgcagctgcgctacggcgaggacgggctggccggggagagc
gtggagttccagaacctggccaccctcaaaccctccaacaaggccttcgagaagaagttc
aagtttgactacaccaacgagcgggcgctgcggcgcaccctgcaggaggagatggtgaag
gacatcctgagcaacgcacacatccagaacgagctggagagggagttcgagaagatgcgc
gaggaccgcgaggtgctgagagtcatcttcccgaccggcgacagcaaggtggttttgccc
tgcaacttgcttcgcatgatctggaacgcccagaagatcttccacatcaacgcgcgcctg
ccctccgacctgcaccccatcaaggtggtggaaggcgtgaaggagctgagcaagaagctg
gtgatcgtgaacggggacgacccgctgagccggcaggcccaggagaacgccaccctcctc
ttcaacatccacctgcgctccacgctctgcagccggcgcatggtggaggagttccggctc
agcggggaggccttcgactggctgctgggcgagatcgagtccaagttcaaccaggccatc
gctcacccgggcgagatggtgggcgccctggcggcccagtcgctgggcgagcccgccacc
cagatgaccctgaacaccttccactacgccggcgtctcggccaaaaacgtcacgctgggc
gtgccccggctgaaggagctgatcaacatctccaagaaacccaagacgccctccctcacc
gtcttcctgctggggcagtcggcccgggacgccgagcgggccaaggatatcctgtgccgg
ctggagcacaccaccctgcgcaaggtgacggccaacacggccatctactacgaccccaac
ccgcagagcacggtggtggcagaggaccaggagtgggtcaatgtctactacgagatgccc
gacttcgacgtgagccgcatctcgccctggctgctgcgggtcgagctcgaccgcaagcac
atgaccgaccgcaagctcaccatggagcagatcgctgagaagatcaacgctggcttcggg
gacgacttgaactgtatcttcaatgacgacaacgcagagaagttggtgctgcggatccgc
atcatgaacagcgacgagaacaagatgcaggaggaggaggaagtggtggacaagatggac
gatgacgttttccttcgctgcatcgagtccaacatgctgacggacatgaccttgcagggc
atcgagcagatcagcaaagtgaggggcctctgccggctggggggtgacagaaccgggctg
ggcctgccccagggcactctgggtaacttggctagagccaggggacaggagtgtgacagc
tggtcttggcctgccccagggcagtctggcttcagtcgcaccacgtccgtcacttcctgt
cctaaactgctgtcctgggttctctccccagctctgggaagggagtgggggctggtggtt
agggcagggtggagaccctgcagtatctgggcccgttgctggccccagcagagggggccc
cttgctaagggggctccggtgacatccccccaggtgctgggcatcgaggcagtgcgcaag
gccctggagcgggagctctaccatgtcatctccttcgacggctcctacgtcaactaccgg
cacctggcgctgctctgtgacaccatgacctgccgcggtcatctcatggccatcacccgg
cacggggtcaaccgccaggacactggccccctcatgaagtgctccttcgaggagacggtg
gacgtgttgatggaggcggcggcccatggggagagcgaccccatgaagggggtgtcggag
aacatcatgctggggcagctggcacccgctggcactggctgcttcgacctgctgctggat
gccgagaaatgcaaatacggcatggagatccccaccaacatccctgggctgggcgtgggc
gtccccaccggcatgttcttcggctcggccccaagccccatgggggggatgtcgcctgcc
atgaccccctggaacctgggggccaccccggcctacggagcctggtccccaagcgttggc
agcggcatgacccccggcgccgccggattctcccccagtgctgcctccgatgccagcggc
ttcagcccaggctattctcctgcgtggtcccccacccccggctcgcccggctccccaggc
ccctccagcccctacgtaccatcaccaggtggggccatgtctcccagctactccccgaca
tcgccggcgtacgagccccgctcgcccggagggtacacgccccagagccccagctacagc
cctacgtccccctcgtacagcccgacgtccccctcctactctcccaccagccccaactac
agcccgactagtccgagctacagcccaacatcgcccagctacagtcccaccagtcctagc
tacagcccgacgtcgcccagctacagtcccaccagtcctagctacagcccgacgtcgcct
agctacagtccgaccagccccagctacagcccgacgtcgcctagctacagtcccaccagt
cccagctacagcccgacgtcgcctagttacagccccactagcccaagctacagccccact
agcccaagctacagccccacctcgcccagctacagcccaaccagccctaattacagcccg
acttcccccaactacacccccaccagccccagctacagcccgacatcacccagctacagc
cccaccagccccaactacaccccgacctcgccaaattatagccccacctctcccagctac
agcccgacgagtcccagctacagcccgacatctccgagctactcaccctccagcccccgc
tacaccccgcagtcgccaacctacacccccagttcgcccagctacagccctagcagcccc
agctacagcccgaccagccccaagtacaccccgaccagcccctcctacagccccagctcg
cccgaatacaccccaacttctccgaagtacagccctacctccccgaagtacagccccacc
tcgcccaagggctcgacctactccccgacctcgcctggctacagccccacctcgccgacc
tacagcctcaccagcccggccatcagccccgatgacagcgacgaagacaactga
DBGET
integrated database retrieval system
