Caldithrix abyssi: Cabys_2933
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Entry
Cabys_2933 CDS
T04549
Symbol
rimO
Name
(GenBank) rimO SSU ribosomal protein S12P methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
caby
Caldithrix abyssi
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
caby03009
]
Cabys_2933 (rimO)
Enzymes [BR:
caby01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
Cabys_2933 (rimO)
Ribosome biogenesis [BR:
caby03009
]
Prokaryotic type
ribosomal protein modification factors
Cabys_2933 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Mur_ligase_C
CLP1_P
Fer4_12
RNase_T
TRAM
Motif
Other DBs
NCBI-ProteinID:
APF19681
UniProt:
H1XYH9
LinkDB
All DBs
Position
complement(3502587..3503882)
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AA seq
431 aa
AA seq
DB search
MKKIHVTTLGCPKNIVDSENLLGLLKINQFEIGQTPEEADVLIINTCGFINDAKEESIQA
ILEALELKKNDPHKKVFVAGCLTQRYRKEIEQEIPEVDAIFGTEEYTEILKALGRGHAAM
DTLYRSRLITTPRHYAYLKISEGCNHTCAFCAIPAIRGKHRSKPMEQLVEEARVLAANGA
KELIIVSQDTSYYGKDLYGKQSIVELLQRLEEVEGIEWIRVLYWYPTNFPMEVLHWMRES
KKLLHYLDLPIQHVSQNVLQKMRRAETRESIENILQTARKLVPDMTFRTTVIVGHPGERE
EDFQELLQFVEAFRFDRLGSFLYSDEEGTAAFELTDKVPEQTARERQEQLMELQREISQE
KNQRLIGQKYSVLIDEYNAEMNFYLARTYQDAPEIDNEVIILNPSGAELAVGHFAQVEIV
DATEYELYAKI
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagattcatgttaccacgttaggctgccccaaaaatattgtcgattccgaaaat
ttgctggggttgttaaaaatcaatcaatttgagatcggacaaacgccagaagaagcggac
gttttaatcatcaatacctgcggattcatcaatgacgccaaggaagaatccatccaggcc
attttagaagcgctggaactcaagaaaaacgatccgcacaaaaaggtgtttgtggctggt
tgtttgacccagcgttaccgtaaagagatcgagcaggaaatccccgaggtggacgccatt
ttcggtacggaagagtacacggagattttgaaagccctgggtcggggacacgccgccatg
gataccctgtaccgttcgcgtttaataaccacgccccgccattacgcctatttaaaaatt
tcggaaggttgtaaccacacctgcgctttttgcgccattcccgccatccgcggaaaacac
cgcagcaaacccatggagcagctggtggaagaagcccgcgtgctggccgccaacggcgcc
aaagagctgatcatcgtttcgcaggatacttcctattacggtaaggatctttacggaaag
cagagtattgtagaattgctccaacgactggaagaagtggagggcattgaatggatcaga
gttctttactggtatccgaccaattttcccatggaagtgctgcactggatgcgcgagagt
aaaaaattgctacactatctcgatctgcccatacaacatgtgagccaaaacgttttgcaa
aagatgcggcgcgccgaaacgcgggagtccattgaaaatattctgcaaacggccagaaaa
ctggtgcccgatatgacgttcaggacgacggtgattgtcggccatcccggcgagcgggaa
gaggactttcaggagttgctgcagtttgtcgaggccttccgattcgatcggctgggctcc
tttttgtattctgatgaagagggcaccgcggcctttgagctgacggataaagtgccggaa
cagacggcgcgcgagcggcaggaacaattgatggagctgcaaagagaaatctcgcaggaa
aaaaatcagcggttgatcggccaaaagtattccgtgctgatcgacgaatacaatgcggaa
atgaacttttatctggcgcgcacctaccaggacgccccggaaattgacaatgaagtgatt
attttgaatccgtccggagcagaactggcggtgggccattttgcgcaagttgagattgtt
gacgccacggaatatgaattgtacgctaaaatatga
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