KEGG   Capsicum annuum (peppers): 107866157
Entry
107866157         CDS       T04646                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107866157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cann03021]
    107866157
Enzymes [BR:cann01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107866157
Transcription machinery [BR:cann03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107866157
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 107866157
NCBI-ProteinID: XP_047271036
LinkDB
Position
1:6308307..6341422
AA seq 1309 aa
MEHDLNVEQQVPEGILKGINFSILSETDAVKWSAKVIGSVNEVTDPALGFPNLIYQCSTC
GANDGKNCEGHFGLINFPYTILNPYFVSEVAQILRKICPGCQSVGRNKFKGADKTSACKY
CDGTLGYPPRKFKVSPKDMFNRTAIIAEVNENVLKKQWETTGVSLASDYWDFIPHDSQQD
ASLSSANYQRVLSHAQVYSILKDVDPGFLQGLLKRKNSILLQNCLLTPNSHRITKFGQHM
IFDESDRLYRKLIDFLGTANDLSNCVLGRIKASKICAERSAISDPVPAATGLKYVRELVL
EKRTNHAFRMVVVGDPNIELGEIAIPCHVAENLHVAEPLSSRNWENMIDLCDLMILQRGG
ILVRRNGVLVRISVMDQLRRGDIIHRPLIDGDVVLINRPPSIHQHSLIALSVRILPINSV
LSINPLVCSPFHADFDGDSLHGYIPQSVDSRIELSEIVALNQQLIDGQNGQNLLSLSHDS
LTAAHLILEPGVFLECFQMQQLQMFCPRQVSMTATVVRAPSGKCYWTGKQLFSLLLPSDL
EYVFPSNGVCISEGEILTSSSGSSWLHDASENLFYSLAKHRGGDTLDLLYAAQEVLGEWL
SMRGLSVSLSDLYISSDPYSRENMIDEVISGLQEAERLSYIQLLMVKYNKDFLAGNLEES
KNSMGFGLEFMSIMQQKSASLSQASATAFKHVFRNTQNLVYNYASNDNSFLAMLKSGSKG
NLLKLVQHSMCLGLQQSLVPLSFRIPRQLSCDGWNAHKSNLVFEKAHKVPECPGPYIPGA
VVENSFLAGLNPLECFVHSLTTCDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAY
GNQIVQFSYNEADQISSTKGTGETVESHNHASHSIGGHPVGSLAACATSEAAYSALDQPF
SALESSPLLNLKKILESGVGXRSGEKTALLFLSKNLERWPHGFEYGALEVKGHLERLLLS
DVVSTVMISYSPETHKSAHSPWVCLFLIDKENVKTRRLKMRSVIDALNMRYRAAKSTKPK
AGTDLPDLHITCKDFSVAEVGNEKSKICITVSAVETSKNSLSLLDTLRDLVIPFLLRTVI
KGFSAFKNVDILWRELPSTLKSSRSSTAELYLHVFMSESCDRIKFWNALVDSCLQIRDLI
DWECSYPDDVHDLTVAYGIDVAWESFLCKLHSAVSETGKKILPEHLLLVADCLTATGEFA
PLSAKGLSMQRKAAGVVSPFMQACFSNPGDSFVRAAKMSLSDDLQGSLESLAWGKTPSIG
TGSSFDLIFSAKGHQLAQPMDVNALLSNYVTGDNPKVKVTLDDDIEMDY
NT seq 3930 nt   +upstreamnt  +downstreamnt
atggagcatgatctgaatgttgagcagcaagtgccagaaggtattctgaagggcataaat
ttcagtattctatcagagactgatgcagtcaaatggtcagctaaggtaattggatcagtt
aatgaagtaacagatcccgctttggggtttccaaatttgatctatcagtgttccacatgt
ggtgcaaacgatgggaaaaattgtgaaggccattttggattaataaattttccatataca
attctgaatccgtatttcgtatcagaggttgctcagatcctgaggaaaatatgtccagga
tgtcaatctgtgggtcgtaataagttcaagggtgctgataagacatctgcctgcaaatac
tgtgatggaactctaggttatcctccaaggaaatttaaagtatctcctaaagacatgttt
aacaggactgccattatcgctgaagtgaatgaaaatgtgttaaagaagcaatgggaaact
actggagtaagtttggcttctgactattgggatttcatcccacatgattcacagcaagat
gcaagtttaagttccgcaaattaccaaagagttttatcacatgctcaggtatatagcatt
ctgaaagatgttgatccagggtttcttcaaggacttctcaaaaggaagaactcaatctta
cttcaaaactgccttttgactcctaatagtcatcgtatcacaaaatttggacagcacatg
atatttgatgaaagtgatagactttacagaaagctgattgactttctagggacagcaaat
gacttgagcaactgtgttttaggtagaattaaagcttccaagatatgtgcagagagatcg
gcaatcagtgaccctgttcctgctgctactggtttgaagtatgtgagagaattggttctg
gaaaaacgcacaaatcatgctttccgaatggttgtggttggtgatcctaacatagagcta
ggtgaaattgctattccatgtcatgttgcggaaaatctccatgtggccgaacctctaagt
tcacggaattgggaaaatatgatagatctctgtgatcttatgattcttcagagaggaggg
attctcgtccgtagaaatggtgtcttagttcgtattagtgtaatggaccagttgcggaga
ggggatattatacatagacctcttattgatggagatgttgtgttgataaatcgacctcca
tctattcatcaacattcactaattgctctgtctgttaggattcttccaataaattctgtt
ctttcaatcaatcctcttgtctgttctccattccatgcggattttgatggcgattccctt
catggttatattccccaatcagttgattctaggattgagcttagtgagattgttgctctg
aatcagcagttgattgatggacagaatggtcaaaatcttctctcattaagtcatgatagc
ttaactgctgctcatttaattttggaacctggagttttcttggaatgcttccagatgcaa
cagctacaaatgttttgtcctcgtcaggtgagtatgactgctactgttgtaagagcacca
tcagggaagtgttattggacggggaaacagttattcagcttgcttttgccgtcagacctt
gaatatgtttttccatcaaatggagtttgtattagtgagggggaaattttgacatcttct
agtgggtcttcttggctgcatgatgccagtgaaaatcttttttatagtcttgctaaacac
cgtggaggtgacactcttgaccttctttatgctgcacaagaagttcttggcgagtggttg
tccatgaggggacttagtgtttcactgtctgatctttacatatcttctgatccatattcc
cgtgaaaatatgattgatgaagtcatttctggtttgcaagaggcagaacgactgtcttat
atccaactgctgatggtaaagtataataaggatttccttgctggaaacttagaagaaagc
aagaactccatgggttttggtttggagtttatgtctatcatgcagcagaaatcagcttcc
ctgagtcaagcttctgctactgctttcaagcatgttttccggaatacccagaatttggta
tataattatgcaagcaatgataactcatttctggctatgttaaaatctgggagtaagggc
aacctgctaaaactggtccaacatagcatgtgtcttggtttgcagcagtctctggttcca
ttatcatttagaataccccgtcaactttcttgtgatggatggaatgctcataaatcaaat
cttgtttttgagaaagcacataaggttcctgaatgtcctggtccttacattccgggtgcc
gtggttgaaaattcttttcttgcgggtttgaatcctctagagtgttttgtgcattcatta
actacctgcgatagttcttttagtggacatgctgatgtttctggaactttgaaccgcaag
cttatgtttttcatgcgtgatctgtacattggatatgatggaacagtgagaaatgcttat
gggaatcaaattgtgcagttctcttacaatgaagcagaccaaatttcttctactaagggc
actggtgaaacagtagaaagtcataaccatgctagtcattcaattggtggtcatcctgtt
ggttcattggcggcctgtgccacttcagaagctgcatacagtgctttggatcaacctttc
agtgcacttgagtcatcgcctttactaaacctgaagaaaatattagaatctggagtaggg
nntcgtagtggcgagaaaactgcattgctgtttctttcaaaaaatcttgagagatggcct
catggttttgaatatggggccttagaggtcaagggtcatctggaaaggcttcttctttca
gatgttgtttctacagtaatgatatcctactcccctgaaacacataaaagcgctcacagt
ccctgggtctgtctttttcttatagataaggaaaatgtgaagacaagaaggttgaaaatg
agatcagttatagatgctcttaacatgagatatagagccgcaaaatcaacaaaaccgaaa
gcaggaactgaccttccagacctgcatataacatgcaaggatttttcagttgctgaagtg
ggtaacgagaagtccaaaatttgcatcacagtttccgctgttgagacctcaaaaaattct
ttgtcacttctggatacacttcgtgatttggtgattccattccttcttcggacggtgata
aaaggtttctccgcatttaaaaacgttgatatcttatggagagaattgcccagcacattg
aaatcctccagaagctctactgcggaactatatttgcacgtcttcatgtcggaaagttgt
gacagaatcaaattctggaatgcgcttgtggatagttgcctccagataagggatttgatt
gattgggaatgcagttatcctgatgatgtccatgatctgactgtagcctatggaattgat
gtagcatgggagtcttttctatgcaaactacattcagcggtgtctgaaactggcaagaaa
atccttcctgaacacttgctacttgtagcagattgtctcacagctacaggggaatttgct
cccttgagtgccaaagggttatcaatgcaaagaaaggctgctggtgttgtttcaccattt
atgcaagcgtgcttttcgaatccaggggattcctttgtcagggctgccaagatgagcctg
agtgacgatctccaagggagtttggagtcattagcttggggtaagaccccttccattgga
acgggctcgtcgtttgacctcatcttttccgcgaagggacaccagctggctcaaccgatg
gatgtgaatgctctgctgagcaactatgtcacaggggataacccaaaggtgaaggtcact
cttgatgatgatattgaaatggactattga

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