Magallana angulata (Portugese oyster): 128162694
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Entry
128162694 CDS
T09348
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
canu
Magallana angulata (Portugese oyster)
Pathway
canu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
canu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128162694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
canu03019
]
128162694
Enzymes [BR:
canu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
128162694
Messenger RNA biogenesis [BR:
canu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128162694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
MMR_HSR1
TniB
ATP_bind_1
AAA_24
AAA_16
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128162694
NCBI-ProteinID:
XP_052681920
LinkDB
All DBs
Position
9:17048056..17059675
Genome browser
AA seq
425 aa
AA seq
DB search
MSEEKSVEEYRLNADEELRFEVEANASVQMELLEGMAEVFGSELTKGKVYNFDQGSKVAV
FTWHGCLIKLQGRTEVAYVAKETPMVMYINTHAALEQMREKAESDNTRGPRVMVVGPTDV
GKSTLTRLLCNYAARLGRAPLFVDLDVGQGQVSIPGTIGSVVVERPADVEEGFHLNAPLV
FHYGHTAPSTNPQLYKLIVSRMAEVTNLKCEKQRKVSISGVVINTGGWIKGGGYDSLKHA
AGSFEVDVIIVLDQERLYNELKRDMPEFVKVILLPKSGGVVERNQHQRSDARDSRIREYF
YGVKINGKDSFFPHPMDIPFSSVKLYKIGAPALPDACLPLGMKSQDNKLKLVPIRPGINI
LHHVFSVSSAASVEDNVIESNTLGHVVISGLDTEKETFNILSPSQNPLPNDILLILDLQF
MDIEI
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggaaaagagtgttgaggagtacaggcttaatgcagatgaagaactgcgattt
gaagtggaggcaaatgcttctgtacaaatggagttgttggagggtatggctgaggtgttt
ggatctgagttgaccaagggcaaagtctacaactttgatcagggctccaaagtggctgtg
ttcacctggcatggctgtttgatcaaactgcaaggaagaactgaggtggcttatgttgcc
aaggaaactccaatggtgatgtacataaacactcatgcagccctggaacagatgagagag
aaggctgagagtgacaacaccaggggaccaagagtgatggttgttggaccgactgatgta
gggaagagcacactgacccgtctcctgtgtaactacgccgccagactggggagggcaccc
ttatttgttgacctagatgtcggacagggtcaggtgtctatcccggggacaattggctcg
gtggtggtggaacgaccagcggatgtggaggaaggtttccacctgaatgctccactagtt
ttccactacggccacacggctccatccaccaacccacaactgtacaaactcattgtgtcc
agaatggcagaggtcacgaacttgaagtgtgagaaacaacgcaaagtcagcatcagtgga
gtggtcattaacacaggggggtggatcaaaggtggtggatacgactcgttaaagcatgca
gcagggtcctttgaagttgatgtgatcatagtacttgatcaggagaggttgtacaacgag
ctgaaaagagacatgcccgaatttgtcaaagtcatccttctacccaaatctggtggagtg
gtggagaggaaccagcatcagagatcagacgccagggattcccgcatcagggagtacttc
tacggagtcaaaatcaacggcaaggactcgttcttcccccaccccatggacatcccattc
agctctgtcaaactgtacaaaattggagcccctgccttacctgatgcatgcctacctctt
ggaatgaagtcacaggacaacaaacttaaactagtacccattagaccaggaattaacatc
cttcaccatgtgttcagtgtcagctcagcagccagtgtagaagacaacgtcatagaatct
aacacccttggccatgttgtcatatctggtttagacacagaaaaagaaacatttaacatc
ttgtctccatcacagaaccctctccctaacgacatactcctcatattggatctacagttc
atggacatagagatctga
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