Cygnus atratus (black swan): 118243302
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Entry
118243302 CDS
T09349
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118243302 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cata04090
]
118243302 (VCAM1)
04091 Lectins [BR:
cata04091
]
118243302 (VCAM1)
CD molecules [BR:
cata04090
]
Proteins
118243302 (VCAM1)
Lectins [BR:
cata04091
]
I-type lectins (Siglecs)
118243302 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
ig
Ig_2
I-set
V-set
ICAM_N
C2-set
C2-set_2
C1-set
Ig_6
ICAM1_3_5_D2
Herpes_gE_N
Receptor_2B4
DUF2808
Syndecan
Adhes-Ig_like
Motif
Other DBs
NCBI-GeneID:
118243302
NCBI-ProteinID:
XP_035393125
EnsemblRapid:
ENSACYG00000012273
LinkDB
All DBs
Position
8:complement(3345840..3354658)
Genome browser
AA seq
547 aa
AA seq
DB search
MSSCHSRRGEINVENATEFTYVLPIVVKAFEMEILPANRVVVQIGEMLVVTCNTTGCASP
SFSWRTQMDHPLGGTVNNYRTYSTLTMNPVSVENSHDYLCTVFCSGKEKKEKSIKVELYS
FPNDPVIEISPSLVAGEPATVICKIPEVYPSDHLEVLLMKEGHTLHEKNFFEDDSTNTET
KTVTYSFNPTTEDIGKEITCVAKLPIANMDFEPKERVTSLKLNANFGPQNTIITVSPSNL
PVEGNPLKLTCVTESNPPAQVVWRKHLADGNIEHFIENNVLSIPHARFTDSGLYICEVIN
LLTNKTEKATVDIVIQAPPKNTTLSIFPSSVVKQGESVTISCTSADVPAVQITLRKKIGD
VITTLETEDGKYTIDKAQLKDAGIYECISINKLGKQSQHIVLDVKVPPQNITVLVYPSEN
VKEGENVTITCSTYSNPPSQMVLKKVHQEREIILPSVNGTFTLYNVTKKDTGKYLLDVFN
EVGNNIKVIEIAVVGKLEKRDQMMPLIIAFSCTTAIAIPVVAILIYVSRKAKINGSYSLV
EALRLKV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatgtcacagtagaagaggggaaataaatgttgagaatgctactgagtttacg
tatgttctccctattgtagttaaagcttttgaaatggagattctacctgctaacagagtt
gttgtacagattggagaaatgctcgtagtcacatgcaatactactggctgtgcatcacca
agtttttcatggagaacccaaatggaccacccccttggaggaacagtgaacaattacagg
acgtactctaccttgactatgaatccagttagtgttgagaattctcatgattatctgtgt
actgtcttctgcagtggaaaagagaaaaaggagaagagtatcaaagttgaactttactct
ttccccaatgatcctgtcattgagatcagcccatcattagttgctggagaaccagccact
gtcatctgtaaaattcctgaagtgtatccttctgatcacctggaagtactcttaatgaaa
gagggacatactcttcatgagaaaaatttctttgaagacgacagcacaaatacagaaaca
aaaactgtgacatactcatttaaccccacaactgaagatattgggaaagagattacttgt
gtggccaaattaccaattgctaacatggactttgagcccaaagaaagagtaacttctctg
aaactgaatgcaaactttggtccacaaaatactatcattactgtatctccaagcaacttg
ccagtggaaggcaaccctctaaaactcacttgtgtgactgagagtaatccaccagcacaa
gtagtttggagaaaacatctggctgatggaaacattgagcattttatagaaaacaatgtc
ctttctattcctcatgctcgtttcactgactcaggactgtacatctgtgaagtaattaat
cttttaactaataaaacagaaaaagcaacagtcgacattgttatacaagcgccaccaaaa
aatacaacactttcaattttcccttcaagtgtggtgaagcaaggagaaagtgttaccatc
tcttgcacatctgcagatgttccagctgttcagattaccctaaggaagaaaataggtgat
gtgatcacaacccttgaaacagaagatggcaaatacaccatagacaaggctcagctaaag
gatgcaggaatatatgaatgcatatccattaacaaactcggaaagcagtctcagcacata
gtacttgatgtcaaagttcctcctcaaaatattaccgtgttagtatatccatcagaaaat
gttaaagaaggagaaaatgtcactattacatgtagcacatacagtaacccaccgtcacag
atggtcctgaaaaaagttcaccaagagagagaaattattctaccatcagtgaatggaacc
tttacgctctacaatgtcaccaaaaaagatacaggcaaatatttgcttgatgttttcaat
gaggttggaaacaatatcaaagtgatagagatagctgttgtaggaaaattggaaaaaaga
gatcaaatgatgccactgattattgcattctcttgcacaacagcaatagcgatacctgtg
gttgcaattttgatctacgtgtcaagaaaagcaaagataaatggatcctacagtcttgtt
gaagcactgaggctgaaagtgtga
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