Cygnus atratus (black swan): 118252882
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Entry
118252882 CDS
T09349
Symbol
GGPS1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase isoform X2
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata00900
Terpenoid backbone biosynthesis
cata01100
Metabolic pathways
Module
cata_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
118252882 (GGPS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cata01006
]
118252882 (GGPS1)
Enzymes [BR:
cata01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
118252882 (GGPS1)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
118252882 (GGPS1)
2.5.1.29 geranylgeranyl diphosphate synthase
118252882 (GGPS1)
Prenyltransferases [BR:
cata01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
118252882 (GGPS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
118252882
NCBI-ProteinID:
XP_035412544
EnsemblRapid:
ENSACYG00000011470
LinkDB
All DBs
Position
3:79781147..79800230
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AA seq
299 aa
AA seq
DB search
MDGMDETSKRILEPYQYLLQLPGKQVRTKLSQAFNHWLNVPEDKIQVIIEVTEMLHNASL
LVDDIEDNSKLRRGFPVAHSIYGIPSVINCANYVYFLGLEKVLTLDHPDAVKVFTRQLLE
LHKGQGLDIYWRDTYTCPTEAEYKAMVLQKTGGLFGLAVGLMQLFSNYKEDLKPLLNTLG
LFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSKPESTQVQNILRQRTENI
DIKKYCVHYLENVGSFEYTRNTLKELESEAYKQIESLGGNPELVALVEQLSKMFKETEN
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggatgggatggatgaaacatctaaaagaatcctagagccataccagtatttacttcaa
ttaccaggtaagcaagtgagaaccaaactgtcacaggcctttaatcactggctgaatgtt
ccagaagataagatacaggttatcattgaagtgacagagatgttgcacaatgcaagcctg
cttgtggatgatattgaagataactcaaagctacgacggggctttccagtggctcacagt
atctatggaattccatcagtaatcaactgtgctaattatgtgtatttccttggcttagag
aaggttttaacccttgatcacccagatgctgttaaagtttttacccgccagctactggaa
ctccataaaggtcaaggcttggatatttactggagggatacttacacctgtcctacagaa
gctgaatacaaagctatggtactacaaaagacaggtggtctctttggattggctgtaggc
ctcatgcagctcttctcgaattataaagaggacttaaaaccacttcttaacacgcttggt
ctcttcttccaaataagagatgactatgccaacttgcactccaaagaatatagtgaaaac
aagagtttttgtgaagacttaactgagggcaagttctcattcccaaccattcatgcgatt
tggtcaaaacctgaaagtactcaggtgcaaaacattttacgccaaaggacagaaaacata
gatataaaaaaatactgtgtgcattaccttgaaaatgtgggttcatttgagtatactcgg
aacacattaaaagagcttgaatctgaagcctataaacaaattgaatcactagggggaaac
cccgagcttgtagcactagttgaacagctgagcaaaatgttcaaagaaacggaaaattaa
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