Cygnus atratus (black swan): 118261607
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Entry
118261607 CDS
T09349
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03020
RNA polymerase
cata03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118261607
09124 Replication and repair
03420 Nucleotide excision repair
118261607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118261607
03400 DNA repair and recombination proteins [BR:
cata03400
]
118261607
Enzymes [BR:
cata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118261607
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118261607
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118261607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
118261607
NCBI-ProteinID:
XP_035428401
EnsemblRapid:
ENSACYG00000006318
LinkDB
All DBs
Position
Unknown
AA seq
1849 aa
AA seq
DB search
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEVLKRVSDEECFVLGMDPK
FARPEWMVCTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFEKMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLV
IVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSAIPGLGVGGSTGM
FFGSAPSPMGAMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYXPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
aacaaccccaaaatcaaggacatcctgggcaagtcgaaggggcagcccaagaagcggctg
acgcacgtctacgacctgtgcaaggggaagaacatctgcgagggcggcgaggagatggac
cacaagttcggggtcgagcagcccgagggcgacgaggacctgaccaaggagaagggccac
gggggctgcgggcggtaccagccgcgcatccggcgctcggggctggagctgtacgccgag
tggaagcacgtcaacgaggactcgcaggagaagaagatcctgctgagccccgagcgcgtg
cacgaggtgctgaagcgcgtctcggacgaggagtgcttcgtgctgggcatggaccccaag
ttcgcgcgccccgagtggatggtgtgcaccgtgctgcccgtgccgcccctcgccgtgcgc
cccgccgtcgtcatgcagggctcggcccgcaaccaggacgacctgacgcacaagctggcc
gacatcgtgaagatcaacaaccagctgcggcgcaacgagcagaacggggcggccgcgcac
gtcatcgccgaggacgtcaagctgctgcagttccacgtcgccaccatggtggacaacgag
ctgcccgggctgccccgcgcgatgcagaagtcggggcgcccgctgaagtcgctgaagcag
cggctgaagggcaaggagggccgcgtgcggggcaacctgatgggcaagcgcgtggacttc
tcggcgcgcaccgtcatcacgcccgaccccaacctggccatcgaccaggtgggcgtcccc
cgctccatcgccgccaacatgaccttcgccgagatcgtcacccccttcaacatcgaccgg
ctgcaggagctggtgcgccgggggaacagccagtacccgggggccaagtacatcatcagg
gacaacggggaccgcatcgacctgcgcttccaccccaagcccagcgacctgcacctgcag
accggctacaaggtggagcggcacatgtgtgacggggacatcgtcatcttcaaccggcag
cccacgctgcacaagatgtccatgatggggcaccgcgtgcgcatcctgccctggtccacc
ttccgcctcaacctcagcgtcaccaccccgtacaacgcggactttgacggggacgagatg
aacctgcacctgccgcagtcgctggagacgcgggcggagatccaggagctggccatggtg
ccgcgcatgatcgtcaccccgcagtccaaccgccccgtcatgggcatcgtgcaggacacg
ctcaccgccgtccgcaagttcaccaagcgcgacgtcttcctcgagcgcggcgaggtgatg
aacctgctgatgttcctgtcgacgtgggacgggaaggtgccgcagcccgccatcctcaag
ccccggccgctgtggacggggaaacaaatcttctccctcatcatccccgggcacatcaac
tgcatccgcacccacagcacccaccccgacgacgaggacagcgggccctacaagcacatc
tcccccggggacaccaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgc
aagaagtcgctgggcacgtcggcgggctcgctggtgcacatctcctacctggagatgggc
cacgacaccacgcgcctcttctacagcaacatccagaccgtcatcaacaactggctgctc
atcgagggccacaccatcggcatcggggactcgatcgcggacgcgaagacgtaccaggac
atccagaacaccatcaagaaggccaagcaggatgtcatcgaggtgatcgagaaggcgcac
aacaacgagctggagcccacgccgggcaacacgctgcggcagaccttcgagaaccaggtg
aaccgcatcctcaacgacgcccgcgacaagacgggctcctccgcccagaaatccctctcc
gagtacaacaacttcaagtccatggtggtgtcgggcgccaagggctccaagatcaacatc
tcccaggtcatcgcggtggtggggcagcagaacgtggagggcaagcgcatccccttcggc
ttcaagcaccgcacgctgccccacttcatcaaggacgactacggccccgagagccgtggc
ttcgtggagaactcctacctggccggcctcaccccaaccgagttcttcttccacgccatg
ggcggccgcgaggggctcatcgacaccgccgtcaagacggccgagaccgggtacatccag
cggcgcctgatcaagtcgatggagtcggtgatggtgaagtacgacgccaccgtgcgcaac
tccatcaaccaggtggtgcagctgcgctacggcgaggacgggctggccggggagagcgtc
gagttccagaacctcgccaccctcaagccctccaacaaggcctttgagaaaaagttcaag
ttcgactacaccaacgagcgggcgctgcggcggacgctgcaggaggagctggtcaaggac
atcctcagcaacgcgcacatccagaacgagctcgagcgcgagttcgagaagatgcgggag
gaccgcgaggtgctgcgcgtcatcttccccacgggggacagcaaggtggtgctcccctgt
aacctcctgcgcatgatctggaacgcccagaagattttccacatcaactcccgcctgccc
tcggacctgcacccggtcaaggtggtggagggggtgaaggagctgagccgcaagctggtg
atcgtgaacggggaggacccgctgagccggcaggcgcaggagaacgccacgctgctcttc
aacatccacctgcgctccacgctctgcagccgccgcatggtggaggagttccgcctgagc
ggggaggccttcgactggctgctgggcgagatcgagtccaagttcaaccaggccatcgcg
caccccggggagatggtgggggcgctggcggcgcagtctctgggcgagccggccacgcag
atgaccctcaacaccttccactacgccggcgtgtcggccaagaacgtgacgctgggcgtg
ccgcgcctcaaggagctcatcaacatctccaagaagcccaagacgccctcgctcaccgtc
ttcctgctgggccagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctg
gagcacacgacgctgcgcaaggtgacggccaacacggccatctactacgaccccaacccg
cagagcacggtggtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgac
ttcgacgtcagccgcatctcgccctggctgctgcgcgtcgagctcgaccgcaagcacatg
acggaccgcaagctcaccatggagcagatcgccgagaagatcaacgccggtttcggggac
gacctgaactgcatcttcaacgacgacaacgccgagaagctggtgctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggatgac
gacgtcttcctgcgctgcatcgagtccaacatgctgaccgacatgacgctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatcatc
atcacggaggacggcgagttcaaggcgctgcaggagtggatcctggagaccgacggcgtc
agcctcatgcgggtgctgagcgagaaggacgtggaccccgtgcgcaccacctccaacgac
atcgtggagatcttcaccgtgctgggcatcgaggcggtgcgcaaggcgctggagcgcgag
ctgtaccacgtcatctcgttcgacggctcctacgtcaactaccggcacctggcgctgctg
tgcgacaccatgacgtcccgcgggcacctcatggccatcacgcgccacggcgtcaaccgc
caggacaccgggcccctcatgaagtgctccttcgaggagacggtggacgtgctgatggag
gcggcggcacacggcgagagcgacccgatgaagggggtgtcggagaacatcatgctgggg
cagctggcgcccgccggcaccggctgcttcgacctgctgctggacgccgagaagtgcaag
cacggcatggagatccccagcgccatccccggcctcggcgtgggcggctccaccggcatg
ttcttcggctcggcgcccagccccatgggggccatgtcccccgccatgaccccgtggaac
cagggagccacccccgcctacggggcctggtcccccagtgtcggaagcggcatgaccccc
gggggggccggcttctcccccagcgccgcctcggacgccagcggcttcagccccggctac
tcgcccgcctggtcgcccacccccggctccccgggctccccggggccctccagcccctac
atcccctccccaggcggcgccatgtcccccagctacagccccacgtcgcccgcctacgag
ccccgctcgcccgggggctacaccccgcagagccccagttacagccccacctcgcccagt
tacagccccacgtcccccagctacagccccaccagccccaactacagccccacttctccc
agctacagccccacctcgcccagctacagccccacctcgcccagctacagcccgacttcc
cccagctacagcccaacctcccccagttacagtcccacttctcccagttacagcccgacc
tcccccagctacagccccacatcccccagctacagccccacttctcccagttacagcccc
acatcccccagctacagccccacttctcccagttacagcccaacctctcccagctacagc
cccacctcgcccagctacagcccgacttctcccagttacagccccacctcgcccagttac
agcccgaccagccccaactacagccccacctcgcccaactacaccccgaccagccccagt
tacagccccacctcgcccagttacnagcccaccagccccaactacaccccgacttcgccc
aactacagccccacgtcccccagctacagccccacctctcccagttacagccccaccagc
cccagttactccccgtccagcccccgctacaccccgcagtcgcccacctacacccccagc
agccccagctacagccccagcagccccagttacagccccaccagccccaagtacaccccg
accagccccagctacagccccagctcccccgagtacaccccgaccagccccaagtacagc
cccacgtcccccaagtacagccccaccagccccaaatacagccccacgtcccccacctac
agccccaccacccccaagtacagccccacgtcgcccacctacagccccacctcgcccgtc
tacacccccaccagcccaaagtacagccccacgtcccccacctacagccccaccagcccc
aagtacagccccacctcgcccacctacagccccaccagccccaagggctccacctacagc
cccacgtcccccggctacagccccacgtcgcccacctacagcctcaccagccccgccatc
agccccgacgacagcgacgaggacaactga
DBGET
integrated database retrieval system
