Carassius auratus (goldfish): 113057594
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Entry
113057594 CDS
T07313
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113057594 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113057594 (clp1)
Enzymes [BR:
caua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
113057594 (clp1)
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113057594 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
AAA_16
TniB
CbiA
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
113057594
NCBI-ProteinID:
XP_026080793
Ensembl:
ENSCARG00000053105
UniProt:
A0A6P6L8C0
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All DBs
Position
39:678874..683801
Genome browser
AA seq
445 aa
AA seq
DB search
MTTEAPEKSADEGLSSSGSAGTSGTRFDLERETELRFEVEAGERVQLELLTGLAEVFGSE
LNRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNTHAALEQMRRQAE
KDNERGPRVMVVGPTDVGKSTVCRVLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSSLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLMPKSGGVVER
SKDCRRDTRDEKIREYFYGFRGTSFYPHAFDVRFSEVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSSVDDDAEVGAEQSRGILESPVCGFVVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagaagcccctgaaaagtcagcagatgagggcctgagttcttcgggcagtgct
gggacttcaggtacacgatttgacctggagagagagacagaactgcgtttcgaggtcgaa
gcaggagaacgagtgcagctcgagctgttgaccggtctggcagaggtgttcggatccgaa
ctgaaccggaataagaagtacaccttcggaccaggctctaagattgcagttttcacctgg
caaggctgcagtgtgtcgctttcaggaaagacggaggtggcttatatctccaaagataca
cccatgctgctgtatctcaacacccatgcagctctagagcagatgagacgtcaagcagag
aaagacaatgagagaggccctcgggtaatggttgtcggaccaactgatgtgggaaagtca
acagtatgtcgagtgttgctgaactatgctgtgcgactgggacgaagacctacgctggta
gaactcgatgtcggccagagcagcgtctctgtgcctggaactatgtcagctctgtgcatt
gaacgtcctgctgatgtagaagaaggcttctctgtgcaggctccacttgtctttcacttt
ggctctaccacaccaggaacgaatatcaaactttacaacaagctgacttccagtcttgca
gaagtattttcccagcgctgtgaggtgaaccgcaaggctagtgtgggtggctgtataatt
aacacctgcggctgggtcaaaggttcaggctaccaggctctggtccactgcgcttcagcc
ttccaggtggatgttgtactagtgctggaccaggagcgtctctataatgagcttaaacgt
gacctgccacactttgtacgtgttgtccttatgccaaagtccggcggcgtggtggagcgc
tcgaaggactgccgacgagatacacgggatgaaaagatccgggaatacttctatggcttc
cgtggaacttccttttaccctcatgcctttgatgtgcgtttttcagaggtgcgtatttac
aagattggtgcgccctcaattccagactcctgtctccctctgggtatgtcccaggacgac
acccagcttaaactcgtcccagtcagccctggcagggacttaacccaccatgtgctgagt
gtgagttcggtggatgatgatgccgaggtgggtgcagaacagagcagagggattctagag
agtcccgtgtgtggcttcgtagttgtgaccgcggtggacacacaagctcaggtgatgacg
gtactctcaccagcacccagacccctgccgcgacacactctgctcatcatggacattcgt
tttatcgaccttaaatga
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