Carassius auratus (goldfish): 113111858
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Entry
113111858 CDS
T07313
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03020
RNA polymerase
caua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113111858
09124 Replication and repair
03420 Nucleotide excision repair
113111858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113111858
03400 DNA repair and recombination proteins [BR:
caua03400
]
113111858
Enzymes [BR:
caua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113111858
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113111858
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113111858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
113111858
NCBI-ProteinID:
XP_026132804
Ensembl:
ENSCARG00000014556
UniProt:
A0A6P6QGU2
LinkDB
All DBs
Position
12:complement(11937933..11951133)
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKSTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFDYANDRALRRTLQEDVVKDVLTNAHVQSALEREYEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPARVVEGVHELSKKLVI
VNGEDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIESKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggatgtccgttactgaagggggcatcaag
taccctgagaccacagaaggaggacgccctaaactggggggacttatggacccccggcaa
ggggtaattgaaaggtcaggcagatgccagacgtgtgcaggtaacatgactgagtgtcct
ggtcattttggtcacattgagttggctaagccagtctttcatgttggcttcatcacaaag
atcatgaaggtcctccgatgtgtctgcttcttctgttcaaaactgcttgtggactcgaac
aatccaaaaatcaaagacattttaaccaagtcgaaggggcagccacggaagcgtctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aagtttggagtggagcagcaggagactgaagaagacctcactaaagagaagggtcatgga
ggctgtggcaggtaccagccacgtatccgtcgctctggcctggagctgtatgctgagtgg
aagcacgtgaacgaagactcgcaggagaagaagattcttctcagccctgaacgtgtgcat
gagatcttcaaacgcatttcggatgaagaggacatgatcttgggcatggaccccaaatat
gcccgtcccgagtggatgattgtcacggtgttgcccgtgcctccacttgctgtgagacca
gctgtggtcatgcagggctctgctagaaaccaagatgatttaacacacaagttggcggat
attgtgaagatcaataaccagctgaagcgaaatgagcagagtggagctgcagcgcatgtt
atagcagaggatgtcaagctgcttcagttccacgtggccaccatggtagacaatgaactg
ccaggtctacctagggcaatgcaaaagtctggtcgtccactaaaatctatcaagcagagg
ctaaaaggtaaagaaggacgtgtccgaggtaatctgatggggaagcgtgtcgatttctcc
gcccgaactgtcatcacgccagaccccaacctgcagatcgaccaggtgggcgttccccgt
tccatcgccgcaaacatgacctttcctgagattgtcacaccctttaacattgacagactc
caagagcttgtgaggagaggtaacagtcagtaccctggagccaaatatattatcagagac
aacggagacagaattgacctgcgattccaccctaaaccaagtgaccttcaccttcagatt
ggatacaaagtggaacgacacatgtgtgacggagacattatagtgttcaaccgacagcct
acgcttcacaaaatgtctatgatgggccacagagtgcgaatcttgccttggtcaacattt
cgactcaacctcagtgtaacaactccatacaatgctgactttgacggcgatgagatgaac
ctgcacttgccacagtccctggagacccgtgctgagatccaagagctggccatggtgcct
cgtatgattgtcacgccacagtccaacagacctgtcatgggtattgtgcaggacacactg
acagctgtgcgcaaattcaccaagagagacgtcttcttggagaggggtgaggtgatgaac
ctcctcatgtttctctccacatgggacggcaaagtgccccagccagctatcttgaagcct
cgacctctctggactggcaaacagatcttcagcttgatcatccctgggcacattaatgcc
atccgcacacacagcacccaccccgatgaagaggacagcggcccttacaaacacatctcc
cctggagacactaaggtgattgtggagaacggtgagctgattatggggatcctgtgtaag
aagtcattgggaacctccgctggctctcttgtccatatctcataccttgagatgggccat
gacatcacacgactcttctattctaacatccagactgtcgtcaacaactggctgctcatt
gagggtcactctattggtattggagactccattgccgataagtcgacatatcaggacatt
caaaacacgattaagaaagccaaacaggatgtgatagaggtcattgagaaagcccacaac
aatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgctcgagacaagactggatcctctgcccagaagtcattgtctgag
tacaacaatttcaaatccatggtggtggctggttcaaaaggctctaaaattaacatttct
caggttattgctgtggtggggcagcagaacgttgagggtaagcgaatcccctttggtttc
aagcaccggactctccctcacttcattaaagatgactatggtccagagagtagaggcttc
gtagaaaactcctatctggctggtctcacaccaactgagtttttctttcacgccatggga
ggcagagagggtctgatcgacacagctgtcaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtctgttatggtaaagtatgatgctacagtcagaaactcc
attaaccaagttgtccagctgaggtatggagaggatggtctggcaggagaggctgtggag
ttccagaacatggctacccttaagccatcccacaaagcctttgagaagaagttcaagttt
gactacgccaatgatagagctctccgccgcactctacaggaagatgtggtgaaagatgtg
ttgaccaatgcccatgtccagagtgctctagagagagagtatgagaagatgaaggaagac
cgagaaatcttgagggccattttccccacaggagacagcaaggtggtactaccgtgcaat
ttggccagaatgatctggaatgctcagaagattttccgcatcaatcctcgaacaccaact
gaccttaacccagcacgagtagtggaaggagttcatgagttgagtaagaagctggtgatc
gtaaatggtgaagaccagttaagcaggcaagcccaggagaacgccactctgctgttcaac
atccacctgcgctccacgctgtgctccaagcgaatgactgaggagttccgtcttagcaca
gaggcttttgattggctgctgggagagatagagtccaaatttaaccagtccattgctcac
cctggtgagatggtaggtgctctggctgcccagtctctgggagagcctgctactcagatg
accctgaacacattccactacgccggtgtgtccgccaaaaacgtcactcttggtgtgcct
cgactcaaagagcttatcaacatctccaagcgacccaagaccccctccttgaccgtcttt
ctcctgggccaagcggcccgtgacgcagagagggccaaagatattctgtgtcgtttggag
cacacaaccttgcgtaaggtcactgccaacacagccatttattatgaccccaaccctcag
aacactgtggtgactgaggatcaggagtgggtcaacgtgtactatgagatgcctgacttc
gatgtgacccgcatttcaccctggctgctgcgtatcgagcttgatcgcaaacacatgact
gaccgtaaactgacaatggagcaaatcgcagagaagatcaatgcaggatttggcgatgac
cttaactgcatcttcaatgatgacaatgctgagaaactggttttgcgaatccgcatcatg
aatagtgacgagaacaagtttcaagaggatgaggaggtagtggataagatggatgacgat
gtcttccttcgctgcattgaatcgaacatgctgacagacatgacactgcaaggcattgag
cagatcagcaaggtgtacatgcatctaccacagactgacaacaagaaaaaaatcatcatc
acagaagagggagagtttaaagctttgcaagagtggatcctggaaactgatggagtcagc
ctcatgagggttctcagtgagaaggatgtggaccctgtcagaaccacctccaacgacatt
gtggagattttcactgttcttggtattgaggctgtgcgtaaggctctagaaagagagttg
taccacgtcatctcttttgatggttcttacgttaactaccgccatcttgccttgctgtgt
gacacgatgacctgcaggggtcacttgatggccatcactcgtcacggtatcaacaggcag
gacactgggccgctaatgaagtgctcttttgaagagacggtggatgtcttgatggaagcc
tcatctcatggtgaatgtgacccaatgaaaggagtgtctgagaatatcatgctggggcag
ctggctcctgcaggcactggttgctttgatctgctgttggatgctgagaagtgcaagtat
ggtatggagattcccaccaacatccctggtatcagtgttgcaggaccgacgggtatgttc
tttggctctgcccccagtcccatgagtggcatgtctcctgccatgactccctggaacaca
ggagccactcctgcatatggtgcttggtctcccagtgttggaagtggaatgacaccaggt
gctgcaggcttctctcccagtgctgcgtctgatgccagcggattctcacctggttattct
cctgcctggtctcctactcccggttctcctggatcccctggaccagctagcccttatatc
ccctcaccaggagccttgtctccaaattactctccaacttctcctgcctacgagcctcgt
tctcctggtggatacacccctcagagccctggttactctccgacctctccatcatactct
ccgacttcgccatcttattctcccaccagtccaaactacagccccacatctccgtcctac
tcgcccacatctccctcctactctccaacttcgccgtcttattctccaacatctccaagt
tactctccgacttcaccttcttactctccgacttcgccgtcttactccccgacttcacca
tcctactctccaacatcccccagctatagcccgacatcccccagctacagcccaacctca
ccgagttacagccccacgtctccgtcttattccccaacttctccatcttattccccgacc
tccccctcttactctcccacttctccaagctactctccaacctccccgtcctattccccg
acatccccgagctacagtcccacttcgcccaactacacgcccacctcaccaagttactct
ccaacctctccatcttacagccccacctcaccttcctactcccccacctctcccaattat
actccaaccagtcccaattactcccccacatctccttcttactccccaacttcgccgtcc
tactctccatccagtccgcgttacaccccgcagtctcccacctacaccccaagctcacct
tcttacagcccaagttctccatcctattcccccacctccccaaaatacacccccacctcc
ccctcctacagtcccagctctcccgaatataccccaacatcccccaaatattcccccact
tccccaaagtactctcccacttcgcccaaatacagtcccacttcaccaacctactcccca
acaactcccaagtacagccccacttcccctacttattctccaacctctcctacctacacc
ccaaccagtcccaaatattcccccacctctccgacttactctccaacttctccaaaatac
tcccccacttcccctacctactctccaactagtccgaagggctccacctacagccccact
tctcccggctacagccccacctctccaacctacagccccgccatcagccctgatgacagc
gatgaagaaaataattaa
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integrated database retrieval system
