KEGG   Corylus avellana (European hazelnut): 132189024
Entry
132189024         CDS       T09426                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132189024
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cave03021]
    132189024
Enzymes [BR:cave01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     132189024
Transcription machinery [BR:cave03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     132189024
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 132189024
NCBI-ProteinID: XP_059459482
LinkDB
Position
ca8:complement(2385767..2397370)
AA seq 1181 aa
MGVSSDAKEDMDLDDDEFLDSSSIHDLDEEFLSSFCKKAAMSFFNEYGLISHQINSYNDF
IKNNLQKIIDSFGEMVVEPGYDPSKKGESEWRYASVRFGKVDLEKPNFWGSESGDGNGKE
YDMLPRHARLQNMTYSSKMKVNIRVQVYTQKLVRSDKFKTGKDQYIDRSIVSEDNRDIII
GRIPVMVKSDLCWMKEAEKGDCDFDHGGYFLIKGAEKIFIAQEQISLKRLWILNVQGWTV
SYKSEMKKNRLIMKLVEVSKVEDIKGGEKVLTVYFLSTEIPVWILFFALGVSSDREVIDL
IDYDSEDASISNILFASIHDADERCEGFRIGKKALNFVDKLVKGTKFPPGESIEECISKY
LFPSLNVPKLKASFLGYMVKCLLQAYSGRRKCDNRDDFRNKRFDLAGELLERELKVHLAH
ARRRMAKVLQRDLYGDRVVRPIEHYMDASIITNGLTRAFSTGAWSHPFKRMERISGVVAT
LGRTNPLQTMAEMRRTRQQVQYAGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAIT
GLVSTNILEPVSSKFFDCGMEELVDDASLRGKYKVFLNGEWIGVCKDSISFVAEVRNKRR
RKQLSHELEIKRDEKHEEVRMFSDAGRILRPLLVVENLNKIKGYKAENYTFESLLHKGIV
ELIGTEEEEDCRTAWGIKYLFMEKEGNSPTKYTHCELDMSFLLGLSCGIIPFANHDHARR
VLYQSQKHSSQAIGFSTTNPDIRVDTLSHQLHYPQRPLFRTMTSDCLGKPGYPLGQHGIL
PKPEFYNGQNCIVAVNVHLGYNQEDSLVMNKASLERGMFRSEHIRSYKAEVDNKESLEKR
RKPDDCVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVVGRCAESGADHSIKLKHTER
GMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI
VPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMRYATPFSTLSVDAITEQLHRAGFSR
WGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG
GVKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKNVANVIQRAVPGGRKIRGP
YCRICESVDDIVKVSVPYGAKLLCQELFSMGISLKFETRPC
NT seq 3546 nt   +upstreamnt  +downstreamnt
atgggggtgtcatcagatgccaaggaagatatggatttagatgatgacgaatttcttgac
tcaagtagcatccatgatttggatgaagagtttcttagtagtttttgtaagaaggcagca
atgtcattctttaacgagtatggtctgatcagtcatcagatcaactcgtataacgatttc
ataaaaaataacctccagaagatcattgattcttttggtgagatggtagttgagcctggc
tatgatccatcaaagaaaggagagagtgagtggcgatatgcttcggttaggtttgggaag
gtcgatcttgaaaagccaaacttctggggtagtgagagtggtgatggaaatgggaaggag
tacgatatgcttcctaggcatgcccggcttcagaacatgacatactcatcaaagatgaaa
gtgaatattcgtgttcaggtttatactcaaaaacttgtaagaagtgacaagtttaaaact
ggaaaagatcaatatattgacaggagtattgtaagtgaagataatagggatatcataatc
gggaggatccctgttatggtgaagtctgacctgtgctggatgaaagaagctgagaaaggt
gattgtgatttcgatcatggaggttattttttaattaagggtgcagagaagatatttatt
gcacaagagcagatcagtttgaagaggctttggattttgaatgttcaaggttggacagtt
tcatacaagtcagaaatgaagaagaataggttaatcatgaagctagtggaggtttctaaa
gttgaggatatcaaaggaggagaaaaagttcttactgtatattttttgtcaacagagatc
cctgtatggatattatttttcgctcttggtgtgtcatcagacagagaagttattgatctg
atagattatgacagtgaagatgccagcatatcaaatatactatttgcatcaattcatgat
gctgatgagagatgtgagggctttcgtattgggaagaaagctttaaattttgtggataaa
cttgtaaagggtaccaaatttcctcctggggaatctattgaagagtgcattagcaagtat
ctgtttcccagtctcaatgttccaaagctgaaggcaagttttcttgggtatatggtgaag
tgcctcttacaggcttactctggccgcagaaaatgcgataacagggatgattttagaaac
aagaggtttgacttggctggtgagctgcttgagcgagagttgaaagtgcatcttgcacat
gcacggaggcgcatggcaaaggttctgcagagagacctttatggagatcgtgttgtgcgt
ccaattgaacactatatggatgcttccataataaccaatggtcttacgagggccttctca
acgggcgcatggtcgcatcctttcaagaggatggaaaggatttcaggtgtagtggcaacg
ctagggcgaacaaatccattgcagacaatggctgaaatgaggaggacacgccagcaggtt
cagtatgctgggaaggttggagatgccagatacccacatccttctcactggggaagggta
tgttttctctctactccggatggtgaaaattgtgggctggtaaaaaatttggctattact
ggcctagtaagcacaaacatattggagcctgtaagttccaaattcttcgattgtgggatg
gaggaattggtggatgatgcctcattacgtggaaagtataaagtgtttttgaatggagag
tggataggagtttgtaaagattccatttcatttgttgcagaggtcagaaacaagagacgc
aggaagcagttgtcacatgagttggaaatcaaaagagatgaaaaacatgaagaagtacgc
atgttttctgatgctggaaggattctacgtcctcttttagttgttgagaatttgaacaag
ataaaagggtataaagctgaaaattacacatttgaatctcttttgcacaagggaatagtt
gagctaattggaactgaagaagaagaagactgtcgtactgcatggggcattaaatatctg
ttcatggaaaaagagggaaattcacctactaagtatacccactgcgaacttgacatgtca
tttttattaggtttgagctgtggaattatcccatttgcaaatcatgaccatgcaaggagg
gtcctttaccagtctcagaagcactcttcacaagctattgggttttccacaacaaatcct
gacatcagagtggatactctgtctcaccaattacattatccccagaggccactttttcgt
acaatgacttctgactgtcttggaaaaccaggctatcctctgggtcaacatggaatactg
ccaaagcctgaattctacaatggtcagaattgtattgtggcagtcaatgttcacctaggg
tacaaccaagaggattctttggtgatgaacaaggcttcattggagcgtggtatgtttcgg
tctgagcacatcagaagttataaggctgaggttgacaacaaggaatcgttggaaaagagg
cggaagcctgacgattgtgtaaactttggaaagattcaaagcaagattggacgtgttgac
agcctcgatgatgatggtttccctttcattggtgcaaacctgcagagtggtgacattgtc
gtagggaggtgtgcagaatcaggggctgatcacagtatcaaactgaagcacactgaaagg
ggcatggttcagaaagttgtgctctcttctaatgacgatggaaagaattttgctgtggtg
tccctgcgacaggtccgatccccatgtcttggagacaaattctcaagcatgcacgggcag
aaaggtgtgttaggttttttggagtctcaagagaactttcctttcacaatacaagggata
gttccagatattgtaataaatccacatgcatttccttcacgacaaactcctggtcaactc
ctagaggctgctttagggaagggaatagcctgtggtggatcaatgagatatgccacccct
ttctccacactctctgttgatgccatcacggaacagcttcacagggctggattttcaaga
tggggaaatgagagagtatacaatggccgaactggtgaaatggttcgttccctcatattt
atgggcccaacattctatcagcgtctgatccacatgtctgaagacaaagtaaaatttcgc
aacactggtcctgttcatcctcttacccgacaaccagtggcagaccggaagcgttttggt
ggggtgaagtttggtgagatggagcgtgactgccttatagcccatggtgcctcagcaaac
ttgcatgaacgcctctttacactcagtgactcctcacagatgcacatttgccggaaatgc
aaaaatgttgcgaatgtgatccaacgggcagtgcctgggggccgtaagattaggggtcca
tattgccggatttgtgaatccgtagatgacattgttaaggttagtgtaccttatggggcc
aagttattgtgccaggagcttttcagcatgggcataagtctcaagtttgaaacccggccc
tgttag

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