KEGG   Caenorhabditis briggsae (nematode): CBG_13620
Entry
CBG_13620         CDS       T01054                                 
Symbol
Cbr-taf-1
Name
(RefSeq) Protein CBR-TAF-1
  KO
K03125  transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CBG_13620 (Cbr-taf-1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:cbr01001]
    CBG_13620 (Cbr-taf-1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_13620 (Cbr-taf-1)
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_13620 (Cbr-taf-1)
Enzymes [BR:cbr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.1  Transferring groups other than aminoacyl groups
    2.3.1.48  histone acetyltransferase
     CBG_13620 (Cbr-taf-1)
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.1  non-specific serine/threonine protein kinase
     CBG_13620 (Cbr-taf-1)
Protein kinases [BR:cbr01001]
 Serine/threonine kinases: Other
  TAF1 family
   CBG_13620 (Cbr-taf-1)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     CBG_13620 (Cbr-taf-1)
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Histone modification proteins
   HATs (histone acetyltransferases)
    CBG_13620 (Cbr-taf-1)
SSDB
Motif
Pfam: DUF3591 Bromodomain zf-CCHC_6
Other DBs
NCBI-GeneID: 8582479
NCBI-ProteinID: XP_045095212
LinkDB
Position
I:complement(11636884..11645878)
AA seq 1752 aa
MNNGHHLHHPSSRPQHHHNAHSLHKHTNGYKTDKKPLETTVIEEDPYANLSEYYANHVAA
RNESSVPPESDNDDNATTSSQEVKKEEEDDGLPEEYPGDPVRLKDLEPFIKPSLRDDTPL
ANILHPDLDGIDPRIFFKDFKPNKTLRFSRLFAQNIKKSSRAEIWWASRTFAKHNERRNR
EREESEDVMETTSDGSKRLKLNIIEKVPGILLAPDEEAIMRLPILTEDEEMAKKNEEGTV
VQPWRVGPAKIWYDMMNLPSTSQAVNYGFKIKKTPVKPNQYHRKLNFIHAEDPSTSSGHS
VEKKVEVIDKSCEATTSEDVLQPFEVIEWEKDVIMDGEEVKDQLLEEFSNGRGCGWIATQ
YTRTYEHFVYAAGNNAFEQMFDGKSAPINLSGPDSLILPGPNRSIFPSTPSDLDVLPWEE
NVIWDADNMAQALEPIDFLVDFQDDPLIYGMPEDRRDEDHHHHRQDSHRKDGYTKKSKMI
LGQVQQRQKQEEDEQMESTMGQFTDNDPFNLSNDDYYVPKATSKTLSTNSLLIQHSTPAT
NIATQFFPTHPSSFRLRFWHRTPFTRRIVRHWSPNRLVPIHTPARHQQRVAAQREAMRQS
HGGGEVFYMKEIQDLSGRDEKLVMIEYCEEHPVLLGQPGMASKIKNYFKRRQANDTEPTF
EYGEIAFSHQIPFLGQLQPGQSLQSIENSLYRAPIFMHKRTRTDFLLIRSQGQWYIRPLP
SLFVAGQQCPLYEVPSPNSKRATVFVRDFLFAFIYRLFWSSEHSPRRLKMEDVRNAFPHY
AESNIRKRLKMCSTFTRYGAETYWLLKPEFRLPSKEEVLSMVTPEMCCAQYSMMAAEQRL
KDAGYGEKYFFTPENDEGSDDEVTIEDEIKCAPWNTTRAFLASQREKCLLDQTGIADPTG
CGQGFSYVRVSQKPHKDENATPAPKKLVTGTNADLRKLPLKEAKEICRTYGVKDEEISAL
TRWEIIDVIRTLSTQAAKATKEGETVSGMARFARGNTRFSSADMQEKYRKHCQRTFDLQN
HTLANTEAISTDDDSTDADSDNEELASRLESMLEANKGKKVISMSEKAKIDFETEERERE
DLKRMIHGDAVNSKGAEKKESEATAEEKKNASQFGEDVAMSASKISGITANQKLKIFRTV
KGPDGKETTRVEIVTRPQLIEAYTRIRMTRDDTFIQVYAKMDEQYKEENRKKKRRLQDQA
RRMKKNEEKQQAKTPKQTVRKEKPPNPNLQKMRCSACHAYGHMKTNRNCPLYGKDPLTPL
KEEDDGNSSSASISVPPPPPPPVRQESHVQVDGMKMKFNINFEELRREQAREEKIKRKLA
KKAEVDVQKRQMEYLTRFDTSDPPPGNGVHSYGGHTDNDEEDRYSQVSGTSSFRNGPGAV
RGGRNSSVSSARRRQSIMPEDDYLQGPIKVNNRMRADPKVVLSTMLTDVLNELKSLEGSD
AFLFPVNPKQVTDYYNIIKNPISFQDIKNKIASYSYQLRKEFIEDIRLMHGNSRMYNGEN
HVLTMNAADILKRAGFLLALRDSEFMKLEKQINPLLDSNDEVGFCFVLDQIIQKVRNIPK
SAPFHTKVDGKRFPSYYVRIQNPIDLGTIEQKNKRHEYQSIDDFLKDMRLILDNSLAFNG
EASIYTAKAKEIWQLTERLVQENMETLVELEKNINPEAAAARQAATSEAEVTADEETIEQ
TDEHPTEDEDDELEEEMEVDTGDDDGQPMWDDDNLAAGQLLNELAMSDSDEDESADAVRR
PANDDDNRLDSF
NT seq 5259 nt   +upstreamnt  +downstreamnt
atgaacaatggacaccacctccatcatccgtcgtcacgtccccaacatcaccacaacgct
cactcccttcacaaacacacaaacgggtacaaaacggacaaaaagccgttggaaactaca
gtaatcgaagaggatccgtacgcgaacctctctgaatactatgctaatcatgtggctgct
agaaatgaatcgtccgtgcctccagaatccgacaacgacgacaatgccacaacatcatca
caagaagttaaaaaagaagaggaggacgatggtcttcctgaagaatatccaggcgatcca
gtccgtctaaaagacctcgaacctttcattaaaccatcactgagagatgacacaccgcta
gccaatattttgcatcccgatttagatggtattgatccgagaatatttttcaaagacttc
aaacccaacaaaacgcttcgtttctcccgactcttcgctcaaaacatcaaaaaatcgtcg
cgcgcggaaatctggtgggcgtctcgaacgttcgcaaaacacaacgaacgtcgaaatcga
gaacgagaagaatcagaagacgtcatggagacgacgtcggacggatcgaaacggctgaag
ttgaacatcatcgagaaggttccaggcattcttttggctccagatgaggaagcgataatg
cgtcttccgattctgacggaagatgaggaaatggcgaaaaagaatgaagagggcacggta
gtacagccatggagagtaggtccagccaagatttggtacgatatgatgaatttgccatcg
acgagtcaggcggtgaattatggttttaagattaagaaaacgcccgtaaaaccgaatcaa
tatcatcgaaaactgaacttcatacatgcagaagacccatcaacgtcttctggacattca
gttgagaagaaggtggaagtaattgataaaagttgtgaagcgaccacttctgaagacgtt
ctgcaaccgtttgaagtgatagaatgggaaaaagatgtgataatggatggagaggaagtg
aaggatcagttattagaggagttttcaaatggaaggggttgcgggtggatagctacacag
tatacgaggacttatgagcattttgtttatgctgctggaaacaacgcattcgaacaaatg
tttgatgggaaatccgcccctatcaacctctctggacccgattctctgattcttcctggc
ccgaatcgatcgattttcccatccaccccatcggatctagacgttcttccatgggaggaa
aacgtgatttgggatgcggacaacatggctcaagcacttgaacccatagacttccttgtt
gatttccaagacgatccactgatctacgggatgccagaagatcgtcgagacgaggatcat
catcatcatcgtcaagacagtcacagaaaagatggatacacgaagaaatcgaaaatgatt
ctgggacaagtacaacagcggcagaaacaagaggaagatgaacaaatggagagtacgatg
ggacaattcacggataacgatcccttcaatttgtccaacgacgactactacgttccgaaa
gccacgtcgaagacgttgtcgacgaattcgcttctgattcaacactcgacaccggccacg
aacatcgccacgcagttcttcccgacacatccatcgtcattccgattgagattctggcat
aggacgccgtttacgagacgaattgtcagacactggagtccgaatcgattagttccgatt
catacaccggctcgacatcaacaacgcgtcgctgctcaacgtgaagcgatgcgtcaatcg
catggaggtggagaagtgttctatatgaaagagattcaagatctaagtggacgagatgag
aaactcgtaatgattgagtactgtgaagaacatcctgtcctcttgggacaacccggaatg
gcatcgaaaataaagaattacttcaagcgacgacaggcaaacgacacagaaccaacgttc
gagtacggagagatagcgttctctcatcaaattccattcctcggacaactccaaccaggc
caatctcttcaatccattgagaatagcctttatcgagctccaatcttcatgcacaaacgt
actcgtacggatttccttctgattcgaagtcaaggacaatggtacatccgcccactgcca
tctctattcgtcgctggtcaacagtgtcctctttacgaggtaccatctccaaattccaaa
cgagccactgtatttgttcgtgacttcctcttcgccttcatctatcgcctcttctggtca
tctgagcactcaccacgtcgtctgaaaatggaagacgttcgaaatgcattcccccactat
gcggaaagtaacataaggaaacgactgaaaatgtgttccactttcacacgttatggtgct
gaaacctattggcttctgaaaccagaattccgtttaccatcaaaagaagaggttctatcc
atggtgactccagagatgtgttgtgctcagtacagtatgatggctgcggagcaaagactc
aaagatgcagggtacggagaaaagtacttcttcacaccggaaaacgatgagggatcggat
gatgaggtgaccatcgaagatgagatcaaatgcgctccatggaacacgactcgcgctttc
ttggcgtcacaacgagagaaatgcttgctggatcagactggaattgcagatccgactgga
tgtggacaaggattctcctacgtgagagtgtctcagaaaccacataaggatgagaatgcg
acaccggctccgaagaagttggtcactggaactaatgcagatttgagaaagctgcctttg
aaagaagcgaaggagatctgtaggacgtatggtgttaaggatgaggagattagtgccctg
acgagatgggaaatcattgatgtgattagaacactgtcaacacaagcggcgaaagcaacg
aaggaaggagaaacggtctccggaatggctcgattcgctcgtggaaacactcgtttcagc
tcggcagacatgcaagagaaatatcgaaaacactgtcagcgcacgttcgaccttcaaaat
cacactctcgccaacacagaagccatctccacagacgacgattcaacagacgccgattct
gataacgaagagttagcgtctcgtctagagtcgatgctagaagcgaataagggcaaaaaa
gtgatctcgatgtccgaaaaagcaaaaattgattttgaaaccgaagagcgggaacgagag
gatttgaaacgaatgatacatggggatgcggtgaattcgaagggagcagagaaaaaagaa
tcagaagcaacggctgaggagaagaagaatgcgtcgcaattcggagaagacgtcgcaatg
tcagcgtcgaagattagtggaatcactgcgaatcagaaattgaagattttccgaacagtg
aaaggaccagatggaaaggaaacgacacgagtggagattgtgacaagaccacagttgatt
gaagcatacacaagaattcggatgaccagggatgacaccttcattcaggtttacgcaaag
atggatgagcaatacaaggaggagaatcgcaagaagaaacgacgccttcaagatcaggct
cgtcgaatgaaaaagaacgaggagaagcagcaggcgaagacaccgaaacagacggttcga
aaggagaagccaccgaatcccaatcttcagaaaatgagatgcagtgcgtgccacgcgtat
ggacatatgaagaccaacagaaactgcccgctatacggaaaggatccattgacaccgttg
aaggaggaagatgacggaaattcgtcatccgccagtatctcggtgccaccaccaccgcca
ccgccagtacgacaggagagtcatgtacaagtggacggcatgaaaatgaagttcaacatc
aatttcgaagagctccgtcgagaacaagcacgcgaagaaaagatcaagcggaagttggcg
aagaaggcagaagtcgatgttcaaaagagacaaatggagtatttgacacgtttcgacact
tcggatccaccacctggaaatggggttcattcgtatggaggacacacggataacgatgag
gaggaccgatattcacaggtttctggaacatcgtcattcagaaatggaccaggagcggtc
cgcggtggtcgtaactcgtcagtctccagtgcccgtcgtcgtcaatccatcatgccagaa
gacgactatctccaaggaccaatcaaagtcaataatcgaatgcgtgctgatccgaaagtg
gtgttgtcaacaatgctgacggatgttctgaacgaattgaagtctctcgaagggtccgac
gccttcctattcccagtgaatccgaaacaagtcacagactactacaacatcatcaagaat
ccgatttcgtttcaagatattaagaataaaattgcctcgtattcctatcaactgagaaag
gaattcatcgaggatatacgtctgatgcatgggaactcgcggatgtacaacggagagaat
catgtgttgacgatgaatgcggctgatatcctcaagcgagccggattccttctggcgctc
cgtgattctgaattcatgaaactcgaaaaacaaatcaatccacttttggactcgaacgat
gaagttggcttctgctttgtccttgaccaaatcattcaaaaagttcgaaacatcccaaaa
tcggcgccgttccatacaaaagtcgatggaaaacgcttcccatcctactacgttcgtatc
cagaaccccattgatttggggacgattgaacagaaaaacaagcgacacgaatatcaatca
atcgatgatttcctcaaggatatgcgtttgattctggacaattcgttggcgttcaatgga
gaagctagtatctatactgccaaggctaaagagatttggcaactcaccgaacggttggta
caggagaacatggagacgttggttgagctggagaagaatatcaatccggaagcggcggcg
gcgcgacaggcggcaacgtcggaagcggaggtcacggcggacgaggagacgatagagcag
acggatgagcatccgacagaggatgaggatgatgagttggaagaggagatggaggttgat
actggagacgacgacggccaaccaatgtgggacgacgacaacttggcagctggccaactg
ctgaatgagttggcaatgtcggattcagatgaggatgaaagtgcggatgcggtcagacgg
ccagccaatgatgatgataatcgactcgactcgttttaa

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