Caenorhabditis briggsae (nematode): CBG_13620
Help
Entry
CBG_13620 CDS
T01054
Symbol
Cbr-taf-1
Name
(RefSeq) Protein CBR-TAF-1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CBG_13620 (Cbr-taf-1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cbr01001
]
CBG_13620 (Cbr-taf-1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_13620 (Cbr-taf-1)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_13620 (Cbr-taf-1)
Enzymes [BR:
cbr01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
CBG_13620 (Cbr-taf-1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
CBG_13620 (Cbr-taf-1)
Protein kinases [BR:
cbr01001
]
Serine/threonine kinases: Other
TAF1 family
CBG_13620 (Cbr-taf-1)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CBG_13620 (Cbr-taf-1)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
CBG_13620 (Cbr-taf-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
8582479
NCBI-ProteinID:
XP_045095212
LinkDB
All DBs
Position
I:complement(11636884..11645878)
Genome browser
AA seq
1752 aa
AA seq
DB search
MNNGHHLHHPSSRPQHHHNAHSLHKHTNGYKTDKKPLETTVIEEDPYANLSEYYANHVAA
RNESSVPPESDNDDNATTSSQEVKKEEEDDGLPEEYPGDPVRLKDLEPFIKPSLRDDTPL
ANILHPDLDGIDPRIFFKDFKPNKTLRFSRLFAQNIKKSSRAEIWWASRTFAKHNERRNR
EREESEDVMETTSDGSKRLKLNIIEKVPGILLAPDEEAIMRLPILTEDEEMAKKNEEGTV
VQPWRVGPAKIWYDMMNLPSTSQAVNYGFKIKKTPVKPNQYHRKLNFIHAEDPSTSSGHS
VEKKVEVIDKSCEATTSEDVLQPFEVIEWEKDVIMDGEEVKDQLLEEFSNGRGCGWIATQ
YTRTYEHFVYAAGNNAFEQMFDGKSAPINLSGPDSLILPGPNRSIFPSTPSDLDVLPWEE
NVIWDADNMAQALEPIDFLVDFQDDPLIYGMPEDRRDEDHHHHRQDSHRKDGYTKKSKMI
LGQVQQRQKQEEDEQMESTMGQFTDNDPFNLSNDDYYVPKATSKTLSTNSLLIQHSTPAT
NIATQFFPTHPSSFRLRFWHRTPFTRRIVRHWSPNRLVPIHTPARHQQRVAAQREAMRQS
HGGGEVFYMKEIQDLSGRDEKLVMIEYCEEHPVLLGQPGMASKIKNYFKRRQANDTEPTF
EYGEIAFSHQIPFLGQLQPGQSLQSIENSLYRAPIFMHKRTRTDFLLIRSQGQWYIRPLP
SLFVAGQQCPLYEVPSPNSKRATVFVRDFLFAFIYRLFWSSEHSPRRLKMEDVRNAFPHY
AESNIRKRLKMCSTFTRYGAETYWLLKPEFRLPSKEEVLSMVTPEMCCAQYSMMAAEQRL
KDAGYGEKYFFTPENDEGSDDEVTIEDEIKCAPWNTTRAFLASQREKCLLDQTGIADPTG
CGQGFSYVRVSQKPHKDENATPAPKKLVTGTNADLRKLPLKEAKEICRTYGVKDEEISAL
TRWEIIDVIRTLSTQAAKATKEGETVSGMARFARGNTRFSSADMQEKYRKHCQRTFDLQN
HTLANTEAISTDDDSTDADSDNEELASRLESMLEANKGKKVISMSEKAKIDFETEERERE
DLKRMIHGDAVNSKGAEKKESEATAEEKKNASQFGEDVAMSASKISGITANQKLKIFRTV
KGPDGKETTRVEIVTRPQLIEAYTRIRMTRDDTFIQVYAKMDEQYKEENRKKKRRLQDQA
RRMKKNEEKQQAKTPKQTVRKEKPPNPNLQKMRCSACHAYGHMKTNRNCPLYGKDPLTPL
KEEDDGNSSSASISVPPPPPPPVRQESHVQVDGMKMKFNINFEELRREQAREEKIKRKLA
KKAEVDVQKRQMEYLTRFDTSDPPPGNGVHSYGGHTDNDEEDRYSQVSGTSSFRNGPGAV
RGGRNSSVSSARRRQSIMPEDDYLQGPIKVNNRMRADPKVVLSTMLTDVLNELKSLEGSD
AFLFPVNPKQVTDYYNIIKNPISFQDIKNKIASYSYQLRKEFIEDIRLMHGNSRMYNGEN
HVLTMNAADILKRAGFLLALRDSEFMKLEKQINPLLDSNDEVGFCFVLDQIIQKVRNIPK
SAPFHTKVDGKRFPSYYVRIQNPIDLGTIEQKNKRHEYQSIDDFLKDMRLILDNSLAFNG
EASIYTAKAKEIWQLTERLVQENMETLVELEKNINPEAAAARQAATSEAEVTADEETIEQ
TDEHPTEDEDDELEEEMEVDTGDDDGQPMWDDDNLAAGQLLNELAMSDSDEDESADAVRR
PANDDDNRLDSF
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggacaccacctccatcatccgtcgtcacgtccccaacatcaccacaacgct
cactcccttcacaaacacacaaacgggtacaaaacggacaaaaagccgttggaaactaca
gtaatcgaagaggatccgtacgcgaacctctctgaatactatgctaatcatgtggctgct
agaaatgaatcgtccgtgcctccagaatccgacaacgacgacaatgccacaacatcatca
caagaagttaaaaaagaagaggaggacgatggtcttcctgaagaatatccaggcgatcca
gtccgtctaaaagacctcgaacctttcattaaaccatcactgagagatgacacaccgcta
gccaatattttgcatcccgatttagatggtattgatccgagaatatttttcaaagacttc
aaacccaacaaaacgcttcgtttctcccgactcttcgctcaaaacatcaaaaaatcgtcg
cgcgcggaaatctggtgggcgtctcgaacgttcgcaaaacacaacgaacgtcgaaatcga
gaacgagaagaatcagaagacgtcatggagacgacgtcggacggatcgaaacggctgaag
ttgaacatcatcgagaaggttccaggcattcttttggctccagatgaggaagcgataatg
cgtcttccgattctgacggaagatgaggaaatggcgaaaaagaatgaagagggcacggta
gtacagccatggagagtaggtccagccaagatttggtacgatatgatgaatttgccatcg
acgagtcaggcggtgaattatggttttaagattaagaaaacgcccgtaaaaccgaatcaa
tatcatcgaaaactgaacttcatacatgcagaagacccatcaacgtcttctggacattca
gttgagaagaaggtggaagtaattgataaaagttgtgaagcgaccacttctgaagacgtt
ctgcaaccgtttgaagtgatagaatgggaaaaagatgtgataatggatggagaggaagtg
aaggatcagttattagaggagttttcaaatggaaggggttgcgggtggatagctacacag
tatacgaggacttatgagcattttgtttatgctgctggaaacaacgcattcgaacaaatg
tttgatgggaaatccgcccctatcaacctctctggacccgattctctgattcttcctggc
ccgaatcgatcgattttcccatccaccccatcggatctagacgttcttccatgggaggaa
aacgtgatttgggatgcggacaacatggctcaagcacttgaacccatagacttccttgtt
gatttccaagacgatccactgatctacgggatgccagaagatcgtcgagacgaggatcat
catcatcatcgtcaagacagtcacagaaaagatggatacacgaagaaatcgaaaatgatt
ctgggacaagtacaacagcggcagaaacaagaggaagatgaacaaatggagagtacgatg
ggacaattcacggataacgatcccttcaatttgtccaacgacgactactacgttccgaaa
gccacgtcgaagacgttgtcgacgaattcgcttctgattcaacactcgacaccggccacg
aacatcgccacgcagttcttcccgacacatccatcgtcattccgattgagattctggcat
aggacgccgtttacgagacgaattgtcagacactggagtccgaatcgattagttccgatt
catacaccggctcgacatcaacaacgcgtcgctgctcaacgtgaagcgatgcgtcaatcg
catggaggtggagaagtgttctatatgaaagagattcaagatctaagtggacgagatgag
aaactcgtaatgattgagtactgtgaagaacatcctgtcctcttgggacaacccggaatg
gcatcgaaaataaagaattacttcaagcgacgacaggcaaacgacacagaaccaacgttc
gagtacggagagatagcgttctctcatcaaattccattcctcggacaactccaaccaggc
caatctcttcaatccattgagaatagcctttatcgagctccaatcttcatgcacaaacgt
actcgtacggatttccttctgattcgaagtcaaggacaatggtacatccgcccactgcca
tctctattcgtcgctggtcaacagtgtcctctttacgaggtaccatctccaaattccaaa
cgagccactgtatttgttcgtgacttcctcttcgccttcatctatcgcctcttctggtca
tctgagcactcaccacgtcgtctgaaaatggaagacgttcgaaatgcattcccccactat
gcggaaagtaacataaggaaacgactgaaaatgtgttccactttcacacgttatggtgct
gaaacctattggcttctgaaaccagaattccgtttaccatcaaaagaagaggttctatcc
atggtgactccagagatgtgttgtgctcagtacagtatgatggctgcggagcaaagactc
aaagatgcagggtacggagaaaagtacttcttcacaccggaaaacgatgagggatcggat
gatgaggtgaccatcgaagatgagatcaaatgcgctccatggaacacgactcgcgctttc
ttggcgtcacaacgagagaaatgcttgctggatcagactggaattgcagatccgactgga
tgtggacaaggattctcctacgtgagagtgtctcagaaaccacataaggatgagaatgcg
acaccggctccgaagaagttggtcactggaactaatgcagatttgagaaagctgcctttg
aaagaagcgaaggagatctgtaggacgtatggtgttaaggatgaggagattagtgccctg
acgagatgggaaatcattgatgtgattagaacactgtcaacacaagcggcgaaagcaacg
aaggaaggagaaacggtctccggaatggctcgattcgctcgtggaaacactcgtttcagc
tcggcagacatgcaagagaaatatcgaaaacactgtcagcgcacgttcgaccttcaaaat
cacactctcgccaacacagaagccatctccacagacgacgattcaacagacgccgattct
gataacgaagagttagcgtctcgtctagagtcgatgctagaagcgaataagggcaaaaaa
gtgatctcgatgtccgaaaaagcaaaaattgattttgaaaccgaagagcgggaacgagag
gatttgaaacgaatgatacatggggatgcggtgaattcgaagggagcagagaaaaaagaa
tcagaagcaacggctgaggagaagaagaatgcgtcgcaattcggagaagacgtcgcaatg
tcagcgtcgaagattagtggaatcactgcgaatcagaaattgaagattttccgaacagtg
aaaggaccagatggaaaggaaacgacacgagtggagattgtgacaagaccacagttgatt
gaagcatacacaagaattcggatgaccagggatgacaccttcattcaggtttacgcaaag
atggatgagcaatacaaggaggagaatcgcaagaagaaacgacgccttcaagatcaggct
cgtcgaatgaaaaagaacgaggagaagcagcaggcgaagacaccgaaacagacggttcga
aaggagaagccaccgaatcccaatcttcagaaaatgagatgcagtgcgtgccacgcgtat
ggacatatgaagaccaacagaaactgcccgctatacggaaaggatccattgacaccgttg
aaggaggaagatgacggaaattcgtcatccgccagtatctcggtgccaccaccaccgcca
ccgccagtacgacaggagagtcatgtacaagtggacggcatgaaaatgaagttcaacatc
aatttcgaagagctccgtcgagaacaagcacgcgaagaaaagatcaagcggaagttggcg
aagaaggcagaagtcgatgttcaaaagagacaaatggagtatttgacacgtttcgacact
tcggatccaccacctggaaatggggttcattcgtatggaggacacacggataacgatgag
gaggaccgatattcacaggtttctggaacatcgtcattcagaaatggaccaggagcggtc
cgcggtggtcgtaactcgtcagtctccagtgcccgtcgtcgtcaatccatcatgccagaa
gacgactatctccaaggaccaatcaaagtcaataatcgaatgcgtgctgatccgaaagtg
gtgttgtcaacaatgctgacggatgttctgaacgaattgaagtctctcgaagggtccgac
gccttcctattcccagtgaatccgaaacaagtcacagactactacaacatcatcaagaat
ccgatttcgtttcaagatattaagaataaaattgcctcgtattcctatcaactgagaaag
gaattcatcgaggatatacgtctgatgcatgggaactcgcggatgtacaacggagagaat
catgtgttgacgatgaatgcggctgatatcctcaagcgagccggattccttctggcgctc
cgtgattctgaattcatgaaactcgaaaaacaaatcaatccacttttggactcgaacgat
gaagttggcttctgctttgtccttgaccaaatcattcaaaaagttcgaaacatcccaaaa
tcggcgccgttccatacaaaagtcgatggaaaacgcttcccatcctactacgttcgtatc
cagaaccccattgatttggggacgattgaacagaaaaacaagcgacacgaatatcaatca
atcgatgatttcctcaaggatatgcgtttgattctggacaattcgttggcgttcaatgga
gaagctagtatctatactgccaaggctaaagagatttggcaactcaccgaacggttggta
caggagaacatggagacgttggttgagctggagaagaatatcaatccggaagcggcggcg
gcgcgacaggcggcaacgtcggaagcggaggtcacggcggacgaggagacgatagagcag
acggatgagcatccgacagaggatgaggatgatgagttggaagaggagatggaggttgat
actggagacgacgacggccaaccaatgtgggacgacgacaacttggcagctggccaactg
ctgaatgagttggcaatgtcggattcagatgaggatgaaagtgcggatgcggtcagacgg
ccagccaatgatgatgataatcgactcgactcgttttaa
DBGET
integrated database retrieval system