KEGG   Cutaneotrichosporon cavernicola: CcaHIS019_0308330
Entry
CcaHIS019_0308330 CDS       T09540                                 
Symbol
RPB9, CcaverHIS019_0308330
Name
(RefSeq) uncharacterized protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
ccac  Cutaneotrichosporon cavernicola
Pathway
ccac03020  RNA polymerase
ccac03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CcaHIS019_0308330 (RPB9)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CcaHIS019_0308330 (RPB9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccac03021]
    CcaHIS019_0308330 (RPB9)
   03400 DNA repair and recombination proteins [BR:ccac03400]
    CcaHIS019_0308330 (RPB9)
Transcription machinery [BR:ccac03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CcaHIS019_0308330 (RPB9)
DNA repair and recombination proteins [BR:ccac03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CcaHIS019_0308330 (RPB9)
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C zf-C2H2_jaz C1_1 Zn_ribbon_recom DZR Anti-TRAP Zn_Tnp_IS1595 NMD3
Other DBs
NCBI-GeneID: 85494633
NCBI-ProteinID: XP_060456028
LinkDB
Position
3:join(2228350..2228400,2228442..2228563,2228746..2228953)
AA seq 126 aa
MPSLKFCGECNNLLYPRSDNLNKVLLYQCRNCQYAENATSEPGWAPCVYKNDLLTIALEQ
AGQTQDLETDPTLQRSQIECPKCHKNGAVFYQDQAKRLTTNMTLFYYCIHCKKPFRDEKA
VAKSSY
NT seq 381 nt   +upstreamnt  +downstreamnt
atgccgtcattaaagttctgcggagagtgtaacaacctcctgtacccgcgtagcgacaac
ctgaacaaagtgctgctgtaccagtgccgtaattgccagtatgcggagaacgcaacgtcg
gagcctggatgggcgccgtgcgtgtacaagaatgacctgttgactattgcacttgaacag
gcaggccagacacaggacctcgagaccgacccgacgctgcagcgttcgcagatcgagtgt
cccaagtgtcacaagaatggcgccgtcttctaccaggatcaggcgaagcggctcacgacc
aacatgaccctcttctactactgtatccactgcaagaagccgttccgtgacgagaaggct
gtggccaagtcttcgtattag

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