Cervus canadensis (wapiti): 122441652
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Entry
122441652 CDS
T07554
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad01524
Platinum drug resistance
ccad03430
Mismatch repair
ccad05200
Pathways in cancer
ccad05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122441652 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122441652 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
122441652 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
122441652 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccad03400
]
122441652 (MSH6)
DNA repair and recombination proteins [BR:
ccad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122441652 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
122441652
NCBI-ProteinID:
XP_043324442
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Position
5:29034179..29054391
Genome browser
AA seq
1361 aa
AA seq
DB search
MSRQSTLYSFFPKSPAVNNANKAPVRASSGSSAAAAATRASPSPGGDAAWSEAGPEPLAG
TTSRAEARNLNGGLRKSASPAVPASSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSHSKEAQKGGHFYSAKPEILRAMQRAD
EALNKDKIKRLELAVCDEPSEPEEEEETEVGAPYTSDKSEEENDIESEEEVRPKVQGSRR
SSRQIKKRRVISDSESDMGGSDVEFKPDTKEEASSDEMSSGVGDSDSEGLDSPVKVAPKR
KRMVTGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSAPQNSESQAHISGGCDDSN
RPTVWYHETLEWLKEEKRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQN
FDLVIFYKVGKFYEMYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLL
SLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGN
LSTETKMILKSSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEEGGVMLPQVLK
GMTSESDSIGLTPGERSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDMVHAT
RPGAVFAKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA
PLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDS
RAIMYEETTYSKKKIIDFLSALEGFKVICKIIGLMEEVIDDFKSKILKQVLTLQTKNPKG
RFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRS
RIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLIN
AEERRDASLKDCMRRLFYNFDKNYKDWQAAVECISVLDVLLCLTNYSRGGDGPMCRPIIL
LPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLAIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASERSTVDAEAVHKLLTLIEEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtatagcttcttccctaagtctccagccgtgaataatgcc
aacaaagcccccgtcagagcctcaagtggaagcagcgccgccgccgctgctacccgggcc
tccccttccccaggcggggatgcggcctggagcgaggccgggcctgagcccctagcgggt
accacgtcgcgggccgaggccaggaacctcaacggagggctgcggaagtcggcctcccct
gcggtccccgccagcagttcttgtgacttctcaccaggtgatttggtttgggccaagatg
gagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattcatc
cgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaacacgg
ggctgggtcagcagaaggctattaaagccatatacaggttcacattccaaggaagcccag
aaaggaggtcatttttacagtgcaaagcctgaaatactcagagcaatgcaacgtgcagat
gaagccttgaataaagacaagattaagaggcttgagttggcagtatgtgatgagccctca
gagccagaggaggaagaagagacggaggtaggtgccccttacacatcagataagagtgaa
gaggaaaatgacattgagagtgaagaggaagtgaggccaaaggtgcaaggatccagacga
agtagccgacaaataaaaaaacgaagggtcatatcagactctgagagtgacatgggtggc
tctgatgtggaattcaagccagacactaaggaggaagcaagcagtgatgaaatgagcagt
ggcgtgggggacagtgacagtgaaggcctagacagccctgtcaaagttgcaccaaagcgg
aagagaatggtaactgggaatggttccctcaagaggaagagttcaaggaaggaaatgcct
tcagccaccaaacgagcaactggcatttcatcagaaaccaagaatactttgagtgctttc
tctgcccctcaaaattctgaatcccaagcccacattagtgggggatgtgatgacagtaat
cgccccactgtctggtatcatgaaactttagagtggcttaaggaggaaaagagaagagat
gtacacaggaggcggcctgatcaccctgattttgatgcatctacactctatgtgcccgag
gatttccttaattcctgtactcctgggatgaggaagtggtggcaaattaagtctcagaac
tttgatctggtcatattttataaagtggggaaattttatgagatgtaccacatggatgct
cttattggagtcagtgagctagggctggtattcatgaaaggcaactgggcccattctggt
ttccctgaaattgcatttggccgatactcagattccctggtccagaagggctacaaagta
gcacgagtagaacagaccgagaccccagaaatgatggaggcacgatgccgaaaaatggca
cacatatccaagtatgacagagtggtgcggagggagatctgtaggatcattaccaagggt
acacagacctacagtgtgctggaaggtgacccctcggagaactacagcaagtaccttctt
agcctcaaagagaaagaagaggagtcttctggccacactcgcgtgtacggagtatgcttt
gttgatacctcactagggaggttcttcataggtcagttttcagatgatcgccactgttcc
aggtttaggactttagtggcacactatcctccggtacaggtcttatttgagaagggaaat
ctctcaacggaaacgaagatgattctcaagagttcgttatcctcttctcttcaggaaggt
ctgataccgggctcccagttttgggatgcagccaaaactttgagaactctccttgaagaa
ggatattttacagacaagttaaatgaggaaggtggggtgatgctaccccaggtgcttaaa
ggtatgacctcagagtcagattctattggattgacaccaggagagaggagtgaattggcc
ctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggagctt
ttatcaatggctaattttgaagaatatgttcccctggattctgacatggtccatgctaca
agacctggtgctgtctttgctaaagccaatcaacgaatggtgctagatgctgtgacatta
aacaacttggagatttttctgaatggaacaaatggttctactgaagggaccttgttagag
aagattgatacttgccatactccctttggtaaacggctcttaaagcagtggctttgcgcc
ccactctgtaaccctcatgctatcaatgaccgcctggatgccatagaagacctaatggtt
gtgcctgacaaaatctctgaggttgtagaccttcttaagaagcttccagaccttgagaga
ctactgagtaaaattcataatgttgggtctcccctcaagagccagaaccacccagatagc
agggctataatgtatgaggaaaccacatacagcaaaaaaaagattattgattttctttct
gctctggaaggattcaaagtaatatgtaaaattatagggcttatggaagaagtcattgat
gactttaagtctaaaatcctcaagcaggtccttactctgcagacaaaaaatcctaaaggg
cgctttcctgatttgacttcagaactgaaccgatgggatacagcctttgaccatgaaaag
gctcgaaagactggactgattactcccaaagcaggatttgactctgattatgaccaagct
cttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgcagt
cgaattggctgtagaaccatagtttactggggaattggtaggaatcgttaccagttggaa
attccagagaatttcatcacccgtaatttgccagaagaatatgagttgaaatccaccaaa
aaaggctgtaaacgatactggaccaaaacaattgagaagaagttggctaatctgataaat
gctgaagaacggagagatgcatcattaaaggactgcatgaggcgactgttctataacttt
gataaaaattataaggactggcaggctgctgtggagtgcatctcagtgttggatgtttta
ttgtgcctgactaactacagtcgagggggtgatggtcctatgtgtcgtccaataattctg
ttgccagaagaagatactcctccctttctagaccttaaaggatcacgccatccctgcatt
acgaagactttttttggtgatgactttattcctaatgacattctaataggctgtgaggaa
gaggaggaggaaaatggcaaagcttattgtgtgcttgttactggaccaaatatgggaggc
aagtctacactcatgagacaggctggcctattagctataatggcccagatgggctgttat
gtaccagctgaagtgtgtaggctcacaccaattgatagagtgtttactagacttggtgcc
tcagacagaataatgtcaggtgaaagtacattttttgttgaattgagtgaaactgccagt
atacttacacatgcaacagcacattctctggtgcttgtggatgaattaggacgaggtact
gcaacatttgacgggacagcaatagcaaatgcagttgttaaagaacttgctgagaatata
aagtgtcgtacgttgttttccacccactaccattcattagttgaagattattctcaaaat
gttgcagtgcgcctaggacacatggcatgtatggtagaaaatgagtgtgaagatcccagc
caggagactattaccttcctctataaattcattaagggggcctgtcctaaaagctatggc
tttaatgcagcccggcttgctaatcttccagaggaggttattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcagtcactgcgattatttcgggaggtttgtctggct
agtgaaaggtcgactgtggatgctgaagctgtccataagttgctgactttgattgaggaa
ttatag
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