Cervus canadensis (wapiti): 122442478
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Entry
122442478 CDS
T07554
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122442478 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccad03021
]
122442478 (POLR1A)
Enzymes [BR:
ccad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122442478 (POLR1A)
Transcription machinery [BR:
ccad03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122442478 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
122442478
NCBI-ProteinID:
XP_043326284
LinkDB
All DBs
Position
5:complement(44841899..44926118)
Genome browser
AA seq
1666 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFTNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLL
LCQLRVLEVGALQAVYELERILYRFLEENADPTACEIQEELEQYTIKILQNNLLGSQGAQ
VKNVCESRSKLISVFWKVHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRRADQKDT
EPQGIEEAQMGKRGYLTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESGFNPSMFFLD
FLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPSEVAAPTT
EEEKDSSMAMDRSFLSQLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG
LTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKIGGKAWVKEP
PRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIIEESTHCGPRAVRAALNLPEAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWHSKHS
NTLLRKGAFLNYSQKIQAAVKALNLEGTNQNGRSPETYQVMLEETGSVGPLMSPYPVSSL
RTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREIL
MVASANIKTPMMSVPVFNTKKALKKVKSLKKQLTRVCLGEVLEKIDVQESFCMGEKQNKF
RVYQLRFQFLPHAYYQQEKCMRPEDILHFMETRFFKILMEAIRKKNSKASAFRSVNTRRA
TQRDLDNAGESERSRGGQEGDEEEEGRIVDAEAEEGDADASDAKRKEKQEEEVDYDSEEE
EEKEEEEEKEDEDGQEEGAGLKEGVQQEQEEGGWVPKENSLPGAPLTQPQKRARSREPQG
AEAVERRVQAVRECHPFIEDYQYDTQGGLWCQVTLKLPLMKVNFDMSSLVASLAQGAVIY
ATKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGI
EAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTF
ETSFQFLKQATLMGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcaaagaacatgccctggcggcggctgcagggcatttccttcgggatgtat
tcggccgaagaactcaagaaattaagcgtgaagtccattacgaaccctcggtacctggat
agcctggggaacccctcagtgaatggcctgtatgatttagctctgggccccgccgactcc
aaagaggtgtgctctacctgcgtgcaggacttcaccaactgctctgggcacctgggccac
atcgagctcccgctcaccgtgtacaaccctctcctcttcgataaactctacctattgctc
cggggctcctgtttaaactgtcacatgctgacctgcccccgggctgtggttcacctctta
ctctgccaactgagagtcctggaagttggggccctgcaagcagtgtatgagctggagaga
attctctacaggtttctggaagaaaatgctgatcctactgcctgtgaaattcaggaagag
ctagaacaatatacaatcaaaatcctgcagaacaacctcctgggatcccagggtgcacaa
gtgaaaaatgtctgtgagagcaggagcaaactcatctctgtcttctggaaggtacatatg
accgctaagagatgtccccactgcaaaactgggcggtcagtggtccgaaaggagcacaat
agcaaactgaccatcacatatccagccatggtgcacaggagagctgaccagaaggacacc
gaaccccagggaattgaggaagctcagatgggaaaacgaggatacctgacaccttccagt
gctcaagaacatctcatagctctttggaaaaatgaagggttctttctgaattaccttttt
ttgggactggaagatgttggcatggagtccgggttcaaccctagtatgttctttctggat
ttcttggtggtaccaccctcaaggtatcgccctgtcaaccgccttggggaccagatgttc
accaatgggcagacggtgaacctgcaggctgtcatgaaggacgtggttctgatccgaaag
cttctggcactgatggcccaagaacaggagttgccaagtgaggtggcagcacccaccacg
gaagaggaaaaagactcttcgatggctatggaccgatcctttttgagtcagcttccaggg
cagtccctcacagacaaactttacaacatttggattcgccttcagagccacgttaatatt
gtgtttgatagtgagatggacaaattaatgatggaaaagtaccctggcattagacagatc
ctggagaagaaggatggtttgttccgaaagcacatgatggggaagcgtgtagactatgca
gcccgctcggtcatctgcccggacatgtacatcaacaccaacgaaattggaattcccatg
gtgtttgccacaaagctgacctaccctcaaccagtcaccccctggaacgttcaggaactg
aggcaggcggtcatcaacggccccaatgtgcaccctggagcctctatggtcatcaatgag
gatggcagtcgcacagccctgagcgcctcggaccttacgcagcgggaggccgtggccaaa
cagctcctgacaccagctacgggggcccctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaacggggacattctcctcctgaaccggcagcccaccctgcacaggccctcc
atccaggcgcatcgcgcccgcgtcctccccgaggagaaagtcctgcggctccactacgcc
aactgcaaggcctacaatgccgacttcgacggagatgagatgaacgcccacttcccccag
agtgaactgggccgggccgaggcctacgtcctggcctgcaccgatcagcagtaccttgtt
cccaaggatggccagccattggcggggctgatccaagatcacatggtttcaggagcaaac
atgaccattcgaggctgctttttcacccgggagcagtatatggagctggtgtaccgagga
ctcacagacaaagtggggcgtgtgaagctctttcctcctgccatcctgaagccctttcct
ctgtggacaggaaagcaggtcgtgtccacattgctcatcaacataatcccggaggaccat
atccccttgaacttgtcgggaaaggcgaagatcgggggaaaggcctgggtgaaggagcct
cctcggctcgttcccggctttaaccccgactccatgtgtgagtcccaggtgatcatcaga
gcaggggagctactctgcggggtgctggacaaggcgcactatgggagctccgcctacggc
ctggtccactgctgctacgagatctacggtggggagaccagcggcagggttctcacctgc
ctggcccgcctcttcaccgcctacctgcagctctacagaggcttcaccttgggagtagaa
gacattttggtcaagccaaaggcggatgtcaggagacatgggatcattgaagagtcaacc
cactgtgggccccgggctgtcagggctgcgttaaacctgccagaggcagcgtcatgtgat
gaggtccgagggaagtggcaggatgcccatctgggtaaagaccagagggattttaacatg
attgacctgaagttcaaggaggaagtgaaccattacagcaatgaaattaacaaggcatgc
atgcccttcggcctgcacagacagttcccagagaataatctgcagatgatggtgcagtct
ggagccaaaggttcgacagtgaacaccatgcagatctcgtgcctgctgggccagatcgaa
ttggaaggccggagacccccgctcatggcatctggcaagtcgttgccctgcttcgagcct
tatgaattcacacccagggctggtggctttgtcactggcaggttcctcactggcatcaag
cctccggagttcttcttccactgcatggccgggcgagagggtctggtggacactgctgtg
aagaccagccgttccggctacctccagaggtgcatcatcaaacacctggaggggctggtg
gtccagtacgacctgacagtccgcgacagcgacggcagcgtggtgcagttcctgtacggg
gaggacggcctggacatccccaagacacagttcctgcagcctaagcagttccccttcctc
gccagcaactatgaggtgataatgaaatcaaagcatctccatgaagttttatccagagcg
gatccccagaaagctctccgtcacttcagagccatcaaaaaatggcacagcaagcattcc
aacaccctcctgaggaaaggcgccttcttgaattactcccaaaaaattcaggcggccgtg
aaagccttgaaccttgagggcacaaaccagaacggccgcagcccggaaacttaccaggtg
atgctggaggagacgggatcagtggggcccctgatgtccccctaccctgtttccagtttg
aggactctgctgcagctcaagtggcagcgctcactatgtgacccgggtgaggccgtgggc
ctgctggccgcccagagcatcggggagccctccacacagatgaccctgaacaccttccac
tttgccggcagaggcgagatgaacgtcaccctgggcattccgaggttacgggagatcctc
atggtggccagcgccaacatcaagacgccgatgatgagtgtacctgtgttcaataccaag
aaagcgctgaagaaagtgaaaagcctgaagaagcaactcaccagagtgtgtcttggggag
gtgttggagaaaattgatgtccaggagtccttctgtatgggggagaaacagaacaagttc
cgggtataccagctgcggtttcagttcctgccacacgcgtactaccagcaggagaagtgc
atgaggcctgaggacatcttacacttcatggaaaccagattctttaaaattctgatggaa
gccatcaggaagaagaacagtaaagcatcggctttcagaagtgtgaacacgcggagagcc
acccagcgggatctagacaatgctggcgagtcggagaggagtcggggagggcaggagggc
gacgaggaagaggaggggcgcattgtggacgctgaagctgaggagggagatgctgacgcc
tcggatgccaaacgcaaggagaaacaagaggaggaggtcgactatgacagcgaggaggag
gaggagaaggaggaggaagaggagaaggaggacgaggacggtcaggaggaaggggccggc
ctcaaagaaggcgttcagcaggagcaggaggaaggcggctgggtccccaaggagaactcg
ctccccggcgcccccctgacgcagccacagaagcgcgcccgaagccgggagccccagggg
gccgaggcggtggagcgccgggtacaggccgtgcgcgagtgccacccattcatagaggac
taccagtacgacacacagggcggcctgtggtgccaggtgacactgaagctccctctcatg
aaggtcaactttgacatgagctctctggtagcgtccttggcccagggagctgtcatctat
gcaaccaagggtatcacaaggtgcctcctgaatgagaccaccaacagtaagaacgagaag
gagcttgtcttaaacacagaaggaatcaacctcccagagctgttcaagtatgccgaggtc
ctagatctgcgccgtctctattccaacgacatccatgccatggccagcacgtatggcatt
gaggccgcactgcgcgtgatcgagaaagagatcaaggacgtgttcgctgtatatggcatc
gccgttgacccccgccacctctccctggtggctgattacatgtgcttcgagggcgtttac
aagcccctgaaccgctttgggatccggtcaaactcctcgccactgcagcagatgacgttt
gagaccagcttccagtttctcaagcaggccacgctcatgggatcccatgacgaactgagg
tccccatcagcctgcctcgtggtcgggaaggtcgtcaagggtggaaccggcctcttcgag
ctcaagcagccactgagatag
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integrated database retrieval system
