Chromohalobacter canadensis: SR908_08545
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Entry
SR908_08545 CDS
T09637
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag00540
Lipopolysaccharide biosynthesis
ccag01100
Metabolic pathways
ccag01250
Biosynthesis of nucleotide sugars
Module
ccag_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
SR908_08545 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ccag01005
]
SR908_08545 (rfaD)
Enzymes [BR:
ccag01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
SR908_08545 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
ccag01005
]
Core region
SR908_08545 (rfaD)
BRITE hierarchy
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
ThiF
NAD_binding_10
KR
Motif
Other DBs
NCBI-ProteinID:
WQH10707
LinkDB
All DBs
Position
1793453..1794409
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AA seq
318 aa
AA seq
DB search
MIVVTGGAGFIGANLVKALNARGHEDVLVVDDLSDGTKFVNLADCTLGDYLDKDDFLARV
KDELRGEPSTLPPIEAIFHEGACSDTTEWDGKFMLDNNFEYSKVLLHFCQHKRIPFLYAS
SAATYGGSEVFVESPEHEKPLNVYGYSKLLFDQYVRVHWEEFEAQVVGFRYFNVYGPREQ
HKGKMASVAYHHHSQVKRGENPKLFGAWEGYEAGMQSRDFIYVGDVVDVNLWCLDNPEVS
GIFNLGTGRAEPFKTIAETVIDYYQTGKIDYIAFPEELKGRYQSYTRADISLLREAGYPA
EFKTVREGVSAYLDWLNG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtagtgacgggcggtgccggtttcatcggcgccaatctagtgaaggctctcaat
gcacgtggccacgaggatgtactcgtggtcgacgacctctccgacggcaccaagttcgtc
aatctcgccgactgcacgctgggggactatctcgacaaggatgacttcctggcgcgcgtg
aaggacgagctgcgcggcgagccgagcaccttgccaccgatcgaggccatcttccatgaa
ggggcctgttcggatactaccgagtgggacggcaagttcatgctcgacaacaatttcgag
tactccaaggtgctgctgcacttctgccagcacaagcgtattcccttcctgtacgcgtcg
tcggcggcgacctatggcggcagcgaggtgttcgtggaatcgccggagcacgagaaaccg
ctcaacgtctacggctactccaagcttctgttcgaccagtacgtgcgcgttcactgggag
gagttcgaggctcaggtggtgggcttccgctacttcaatgtctatggcccgcgcgagcag
cacaaaggcaagatggccagcgtcgcctatcatcaccacagccaggtgaagcgcggcgag
aatcccaagctgttcggtgcctgggaaggctatgaagccggcatgcaaagccgtgacttc
atctatgtcggcgacgtggtggacgttaatttgtggtgcctcgacaaccctgaggtgtcg
ggcatcttcaacctgggcaccggccgtgccgaaccgttcaagaccatcgccgagacggtg
atcgattattatcagaccggcaagatcgactacatcgcctttcccgaggagctcaagggg
cgctaccaaagctacacccgcgccgatatctcgctcttgcgtgaggcgggctacccggcg
gaattcaagaccgtgcgcgagggtgtcagcgcctatctggattggttgaatggctga
DBGET
integrated database retrieval system
