KEGG   Cajanus cajan (pigeon pea): 109804048
Entry
109804048         CDS       T04868                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03020  RNA polymerase
ccaj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109804048
  09124 Replication and repair
   03420 Nucleotide excision repair
    109804048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccaj03021]
    109804048
   03400 DNA repair and recombination proteins [BR:ccaj03400]
    109804048
Transcription machinery [BR:ccaj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109804048
DNA repair and recombination proteins [BR:ccaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109804048
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 109804048
NCBI-ProteinID: XP_020221386
LinkDB
Position
8:complement(16396838..16400466)
AA seq 204 aa
MSEKGGKGASLLSKGGSLKGKDDSATKSSKGRKVQFSKEGAFESGISSSLTSLKSGGKGG
KVANGGKSSQSKDPHSSDQRVGKKLSENIKCLMDCEAADILQGIQEQMVMLSRDSTFKMP
ISFDKGLQYAKNNSKYTNPQSTRRVLEPLAKCGLTDSEVCVIGNVCPETIDEVFALLPLL
KERNVDRQVLKDSLSELAKLRRPV
NT seq 615 nt   +upstreamnt  +downstreamnt
atgtcagagaaagggggaaagggcgcttcgctgttaagcaaagggggatctctaaaaggg
aaagatgacagtgcaacaaaatcatcaaagggaaggaaggttcagttttctaaagaaggt
gcatttgaatctggaataagtagttcacttacttcactaaaatctggtggaaaaggagga
aaggttgcaaatggtggaaagagttctcagtcaaaagacccgcattcatcagatcaaaga
gttgggaaaaaactttccgaaaatatcaaatgcctgatggactgtgaggccgcagatatt
ttacaaggaattcaagagcagatggtcatgttatctagagattcaactttcaaaatgccc
atatcatttgacaagggactgcagtatgccaaaaacaatagcaagtatacaaatccgcag
tctactagacgtgttcttgaacctcttgcaaaatgtggtctcactgacagtgaggtatgt
gtgattggtaatgtgtgcccagaaactattgatgaagtgtttgctcttctcccattattg
aaggagagaaacgttgacagacaagttcttaaagattcgttgagtgagcttgctaagctt
agacggccggtgtaa

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