Ceratina calcarata (carpenter bee): 108624974
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Entry
108624974 CDS
T06061
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X4
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108624974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108624974
Enzymes [BR:
ccal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108624974
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
108624974
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108624974
NCBI-ProteinID:
XP_017880115
LinkDB
All DBs
Position
Unknown
AA seq
2018 aa
AA seq
DB search
MLRPLLLAALVTLSWGIPTPDDVTEVAVKESDESLILRAKEFLKKMDKEYAEWNNKQTVA
EWNYASDLTQDNLAKKLNVSAEAARYYKSSWQEVNKFPWRDLKDENLKRQFSKLSVLGIA
ALPEDLHQEYERIISDMENIYSTAKICDYKNRTKCDLALEPELTELLMNSRDPEELKYVW
VQWRKATGEKMKSLYARYVELSNMAATMNNYTDNAAYWMRDYEADDFPAQIETLWQQLKP
LYLQLHAYVRRELRKKYGEDVVSKDGPIPAHLLGNMWAQTWSNVADFSLPYPGKQLPEVT
DAMIKQGYNATTIFRVAEDFFTSINLTAMPDYFWQRSILEKAKDREMICHASAWDFYDGK
DFRIKQCTRVNMEDLLTAHHEMGHIEYYLQYKNQPTIFKEGANPGFHEAVGDVIALSAST
PSHLKAIKLLDNDSTDKEANINHLYLKGLDKIVFLPFAYMMDKWRWDVFQRTVTPDNYNC
HWWELAESFQGIESPVDRSEDDFDPGAKYHIIANVEYIRYYVSFIVQFQFHKALCIEAKQ
YDPKNPNSKSLHQCDIYNNKQAGNLLKSMLALGSSKPWQDAMEKITGQRNMDTTGLMEYF
KPLTDWLIEENKKTNEYIGWKPRARRKIRKIASAMVKEQFRETDVARKISHVSFGVDSRH
NMERQAHIHVVAKNLYNQDVEHTPVPYGVLDRRMGTCNNTTNCVSCGKSLSECIGHFGYI
DLELPVFHVGYFRSVIGILQTVCKNCSHVMLSEADKDYYLIRVLNPNLGYLARKALRKQI
LEKAKKTTVCQNCGDLNGIVKKVGLLKIVHEKYRSKKKIDAVVQEKLAEYSNVLEDNKAL
EGVLQSGLINVLNPIEVQSILEKIPEHDIPLLMMNSQCALPKDLILTRIPVPPICIRPSV
VSDLKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEMT
GIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGIPIHV
AKILTYPERVNPSNIELMRKLVRNGPDMHPGANFVQQGKTHFKKYLRYGNRQKIAQDLQY
GDIVERHLRDDDVVLFNRQPSLHKLSIMALKAKVLEHRTFRFNECVCTPFNADFDGDEMN
VHQLQTEEARAEALVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKDVFFNRAQANQ
LAGCLIAGPDLAMSVNLPEPAILKPTQLWTGKQIFSLILRPNKSCNVRANLKTKGRAYTS
NKELCINDSYVIVRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATTAMWRLARMA
SYFLMNRGFSIGIGDVTPGQGLLKAKQELLNAGYSKCTEYIRQMEDGRLVCQPGCTQEET
LEAMILKELSVIRDHAGKACLKELHPSNSPLVMALSGSKGSFINISQMIACVGQQAINGR
RVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAE
TGYMQRRLVKSLEDLCLHYDMTVRNSVGDIIQVLYGGDALDPTYMEGKDCPVDYERILDH
VRAKSPCKDEDPLDASNVLKATVELLNSEEYECLSEEFKQELSAFLKSVARKIARLRHHA
PLNVPVVLQLERLTVSQLVEFIHTCKEKFMRAKIEPGTAVGALAAQSIGEPGTSMTLKTF
HFAGVASMNITQGVPRIKEIINANPKISTPIITAALENDADPEFARRVKGRIEKTTLGEV
TEYIEEVYLPDDCFLLIKLDVDRIKLLKLEVDVNSICYSILTSRLKLNPKLVSVKGDSII
SVSPGKGKYSLNYALTQLKETIPNIVIKGLPTVSRAIIHNDDSSGKTRYKLFVEGDNMRE
VMATLGILGNKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLM
TSRGEVLGITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDVICGVSESIIMGIPVP
VGTGIFKLLHKYPFRSYFFNKTNSTTISSLFSLLIKYS
NT seq
6057 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtccgttgctgttagcagctctcgtgacgctgtcatggggcatcccgactccc
gacgatgtcacggaagtcgccgtgaaggaatcggacgaatccctcatactgagggccaag
gagttcttgaagaaaatggacaaggagtacgcggagtggaataataaacagaccgtcgcg
gaatggaattacgccagcgacttgactcaggataatctagcgaagaagctgaacgtgtcc
gcggaggccgcgaggtattacaagtcctcctggcaggaggtgaacaagttcccttggagg
gacctcaaggacgagaatctcaagaggcagttctcgaagctcagcgttttgggaatagcc
gcgcttcccgaggatctccatcaagaatacgagaggatcataagcgacatggagaacatc
tacagcacggctaagatctgcgattacaagaacagaaccaagtgcgacctggcgttggaa
ccggagctgaccgagctgttgatgaacagtcgggaccctgaagagttgaagtacgtctgg
gtccagtggaggaaagccaccggggagaagatgaagtctctctacgcgagatacgtcgag
ctgagtaacatggctgcgacgatgaacaattacaccgacaacgcggcttactggatgaga
gactacgaggccgacgacttccccgcgcagatcgagaccctctggcagcagttgaagccg
ctgtatttgcaactgcacgcgtacgtccgtcgggaattgcgtaaaaaatacggcgaggac
gtcgtctccaaggacggacctatcccggcacatttactcggcaacatgtgggcccagacg
tggagcaacgtcgcggacttctctctcccctatccagggaaacagttaccggaagtcacc
gacgcgatgatcaaacaaggatacaacgcgaccactatattccgcgtggcggaggatttc
ttcacgtcgatcaatctcactgcgatgccggattacttctggcaaaggtcgatacttgaa
aaggcgaaggaccgcgagatgatctgccacgcgagtgcctgggacttctacgacggaaag
gacttcaggatcaaacagtgcaccagagtcaacatggaggatctgcttactgcccatcac
gaaatgggtcacatcgaatattacttgcaatacaagaaccagcctactatattcaaagag
ggtgcgaaccctggcttccacgaggccgtcggagacgtcatagcactcagcgcttctacg
ccgagtcatctgaaagccatcaaattgttggacaacgattcgacggacaaggaagctaac
atcaatcacctttacttgaaggggctcgataaaatcgtgttcctacccttcgcttacatg
atggacaaatggagatgggacgtgttccaacgaacggtcacgcctgacaattacaattgc
cattggtgggagctggccgagtcgttccaaggtatcgagtcacccgtggacagatcggaa
gacgacttcgatcccggcgcgaagtaccatataatagcgaacgtggaatacatcagatac
tacgtcagcttcatcgtacaattccaatttcacaaggcgctctgtatagaagcgaaacag
tacgacccgaagaatccaaactcgaaatctcttcatcaatgcgatatctataacaacaaa
caagctggcaatctattgaaatctatgctggcgttgggctcgtcgaaaccttggcaagac
gcgatggagaagatcactggtcaaaggaacatggacaccacggggctcatggagtatttc
aaaccgctgaccgattggttgattgaagagaacaagaagaccaacgaatacatcggttgg
aaacctagggcaaggcgtaagatacgaaaaatagcctccgcgatggtgaaggaacagttc
agggagaccgacgtagctcggaagatctcccatgtgtccttcggagtggacagtcgccac
aacatggagaggcaggcccatatccacgtcgtggctaagaatctgtacaaccaggacgta
gagcacacgccggtaccttacggtgtcctcgacaggagaatggggacttgcaacaacacg
acgaattgcgtgtcctgcggtaaaagcttgagcgaatgcataggacactttgggtacatc
gacttagagttgcccgttttccacgtcggctactttagatccgttatcgggatcctacag
actgtgtgcaaaaactgttcgcacgtcatgttgtctgaagccgataaggattactatttg
atcagagtactgaatcccaacttgggctacttggcacgcaaagcactgcgcaaacagatt
ctggaaaaagccaagaagactacggtctgccagaactgcggagatctcaacggaatagtg
aaaaaggtcggcttgctgaaaatcgtccatgagaagtacagatcgaagaagaagatcgac
gcggtcgtacaggagaagttggcggagtacagtaacgtgctcgaggacaataaagcgctg
gaaggggtacttcaaagcggactgatcaacgtgttgaaccctatagaggtgcaaagtatt
ctcgagaagatcccggaacacgacattcctctgttgatgatgaactcgcagtgcgcgttg
ccgaaggatttgatattaacgaggatccctgtgccaccgatttgcatcaggccgagcgtc
gtatctgatttgaaagccggcacgacggaagatcatttaacgatgaagctgtcggagata
gttttcattaacgatgtgattcagaagcatcggcagagcggagccaaagtgcagatgtac
aacgaggactgggaatttctacaattgcattgcgctctttatataaacagcgaaatgacc
ggtattccgctcaacatgcaaccgaagaagtctgggagaggactggttcagagactgaag
gggaagcagggtagatttcgtggtaacttgtctgggaaacgcgtagacttctctagtcgt
acggtcatctcgccggatcctaatctccgaatcgagcaagtcggtatacctattcacgtc
gcgaaaatattaacgtacccggagagagtcaatccgtcgaacatagaattgatgcggaag
ctcgtgaggaacggcccggacatgcaccctggggcgaacttcgtacaacaagggaagacg
cattttaaaaagtatctcagatacggaaatcggcaaaagatcgcgcaggacttgcagtac
ggcgacatcgtcgagaggcatctgagggacgacgatgtagttttgttcaacagacaaccg
tcgctgcacaaattaagtataatggcactcaaggcgaaagtattggagcacagaacgttc
aggttcaacgaatgcgtttgcactccgttcaacgcggatttcgacggtgacgagatgaac
gttcaccagttgcagaccgaagaagcgagagccgaggctctggtcttaatggcgaataaa
tcaaatttggtcacacctcgcaacggggaattactgatagcagcgacacaggatttcatc
actggcggctatctattgacacagaaggatgtattttttaatcgagctcaggcaaaccag
ttggctggttgcctcatagcaggacccgatctcgcgatgtctgtaaatctcccggagccg
gctattttaaaaccgactcagttatggaccgggaaacagattttcagtttaattctaaga
ccgaacaagagctgcaacgtgagagccaacttgaagaccaaagggagagcttataccagt
aacaaagaattgtgcatcaatgattcctatgttatcgttcggaactcagaactgttggct
gggtctatggataaatcgacgttaggctcgggatccaagcagaatatattctacattttg
ctgcgcgactggggcgaggacatcgcgaccactgctatgtggcgattggcgagaatggct
agctattttttaatgaacagaggattctccatcgggattggtgacgtgacaccgggtcag
ggacttcttaaagctaaacaggaactcttaaacgccgggtattccaagtgtaccgagtac
attcgtcaaatggaagacggtcgcctcgtgtgccagcccggttgcacgcaggaggaaacg
ttggaggctatgatactgaaagagctgtcggtgatccgtgatcacgccggtaaagcttgt
ttgaaagaattacatccgagcaacagcccgttggtcatggccttgtccggcagtaaagga
agcttcatcaatatttctcaaatgatcgcttgcgtcggtcagcaggcgattaacgggcgc
agggtaccgaacggtttcgaggacagggctttgccgcattttgaacgacactcgaagatc
ccggcggccaaagggttcgtagagaattcgttctattccgggctgacgccgacggagttc
ttttttcacacgatgggaggaagggaaggtctcgtagacactgcggtgaaaaccgctgag
actggttacatgcagaggcgattggtcaagagtttggaggatctctgcctccactacgac
atgaccgttcgcaattctgtcggagacatcattcaggttctatacggcggagacgccctg
gatcccacgtacatggaaggcaaggattgtccggtggattatgaaagaatattggatcac
gtgagagcgaaatcgccttgcaaagacgaggacccgctcgatgcttccaacgttctcaag
gccactgtggaacttctaaattccgaggaatacgaatgcctcagcgaggaattcaaacaa
gaactgtccgcgtttctaaaaagcgtagcaaggaaaatagcccgtctcaggcatcacgcg
ccgttgaacgtgcccgtggttctacaactcgagcggctcaccgtgtctcaattggtcgaa
ttcattcacacgtgtaaagagaagttcatgagagcaaagatagaaccgggaacagcagtg
ggtgctctcgctgcgcagagtatcggggaacctggcacttcgatgactttgaaaacgttt
cacttcgctggtgtagcgtccatgaatattactcagggtgtgccgcgtattaaagaaatt
ataaatgcaaacccgaagatcagcactccgatcatcacggcggctctcgaaaacgacgcg
gatccggaattcgccaggagagtaaagggcaggatagagaaaacaactttaggcgaagtt
acagaatacatcgaagaagtctatctaccagacgattgctttttattaatcaagttagac
gtcgataggataaagttattgaaactagaagtcgacgtcaactccatatgctattcaatt
ttgacttcacggttgaagttgaatccaaaattggtaagcgtcaaaggagattctatcatc
agtgtatctccaggcaagggtaaatacagtttaaactatgcgttgacgcagttgaaagaa
acgattccgaacatcgtcatcaagggtttgccgacagtttcgagagctataattcacaac
gacgattcgagtgggaaaacgaggtacaagttgttcgtagaaggggataatatgcgagaa
gtgatggctactctcgggatacttggaaacaaaaccacttcgaacaatacaatcgaggtc
ttcaaaacgttaggaatcgaagctgcgagagctactataatgacagaaataaagctagta
atggaaaatcatgggatgagcatcgatcgcaggcatccgatgctcgtagctgatttaatg
acgagcaggggagaagtgttgggaattactaggcagggtttagccaagatgaaggaatcc
gtcttaaatctggcctcgttcgagaaaactgcggatcacctgttcgacgcggcttactat
ggacagaaggacgtgatttgcggcgtttcggagtcgatcatcatgggtatcccagttccc
gtgggaacggggatattcaaactacttcacaaatatccttttcgatcttatttctttaac
aagactaattcgactacaatttcttcgttattttccttattaattaaatacagctga
DBGET
integrated database retrieval system
