Cyprinus carpio (common carp): 109046857
Help
Entry
109046857 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03020
RNA polymerase
ccar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109046857
09124 Replication and repair
03420 Nucleotide excision repair
109046857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109046857
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109046857
Enzymes [BR:
ccar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109046857
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109046857
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109046857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
109046857
NCBI-ProteinID:
XP_018920188
LinkDB
All DBs
Position
43:complement(2383434..2542731)
Genome browser
AA seq
1066 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWYVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETG
VLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLAL
MAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR
KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY
NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCA
SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR
FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEI
FEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYT
KRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ
YRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNV
QKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQ
ILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIA
NTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgat
ctgtggcaggaggcctgttggtatgttattagctcatactttgatgaaaaaggtttggtg
cgacagcagctggactcattcgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaagaa
ccgcctcggtacctcctgaagtttgagcaaatctatctgtccaaacccactcactgggaa
agagacggcgctccatcacctatgatgccaaacgaagctagactccgaaatctcacgtat
tctgcccctctgtatgtggatatcacaaagaccatcataaaagatggggaagagcaacag
cagacacagcatcagaaaaccttcatcggcaaaattcccatcatgctccgttccacgtac
tgtctcctcagtggcctaacagatcgtgatctttgtgagttgaatgagtgcccactggac
cctggaggctacttcatcatcaatggttcagagaaggtcctgattgctcaagagaagatg
gccactaacacagtgtatgtgtttgccaagaaagactccaagtatgcttacacaggagag
tgcaggtcatgtctggagaactcctccagacccaccagcactatctgggttagcatgatg
gcccgtggaggacagggagtgaagaaaagtgccatcggccagaggattgtttccactttg
ccgtatatccggcaggaagtacccatcatcatagtattccgtgcattgggatttgtgtct
gatagagacatcctggaacacatcatctatgactttgatgatcctgagatgatggaaatg
gtgaagccatctttggatgaggcctttgtgattcaggaacagaatgtggctctgaacttc
attggctccagaggggccaaacctggtgtcaccaaagagagaagaatcaaatatgctaag
gaggttttgcagaaggaggtgctgccacatgttggtgtatcagatttctgtgagaccggc
gtgctgaacaggttgaccttcgcttccactctttcccacctgcgccgtgtaaactcgcct
ataggacgagatggcaagctggccaaacctaggcagcttcataacacactgtggggtatg
gtgtgccctgctgagaccccagagggccatgctgtaggtttggtgaagaatttggcgctc
atggcctacatttctgtgggatctcagccatcccccatcctggagttcttggaagagtgg
agcatggagaacctggaggaaatctcacctgctgccattgcagatgctacgaagattttt
gtgaatggttgctgggtgggtattcataaagatccagagcaactgatgaacacactgcgg
aaactgaggagacagatggacatcattgtgtctgaggtgtcaatgatcagagatattcgt
gagcgggagatcaggatctacacagatgctggcaggatctgccgtccgctgcttattgta
gaaaagcagaaacttcttctgaagagacgacatattgaccagctcaaagagagagagtac
aacaattacagttggcaggacctggtagccagtggtgtggttgaatatattgacacacta
gaggaggagactgtgatgttggccatgacccctgatgaccttcaggagaagggagtggct
tattgctccacctacacacattgtgagatccacccgtccatgattttgggtgtctgtgca
tctattattcccttccctgatcacaaccagtctcccagaaacacgtaccagtctgctatg
ggtaagcaagccatgggagtttacatcaccaacttccatgtgcgtatggataccctggca
catgtgctctactacccccagaaaccccttgtcacaactcgttctatggagtacctgcgc
tttagagagctgccggcaggtatcaattccattgtggctattgcatcatatactggatac
aaccaggaagattctgtcatcatgaaccgttcagctgtggatcgtggattcttcaggtct
gtcttctaccgctcatacaaggaacaggaatccaagaaaggctttgaccaggaagagatc
tttgagaaacccacccgagagacctgtcaaggcatgcgacatgccatctatgacaagttg
gatgacgatggtttgattgctcctggtgtacgtgtgtctggcgaagatgttatcattggt
aaaaccgtaacccttcccgagaatgacgatgagctggatagcaccaaccgtcgctacacc
aagagagattgcagcactttcctgcgcaccagtgaaactggaatcgttgaccaagtcatg
gtcacgctaaaccaagagggctacaagttttgcaaaattagggtccgttcagttcgtata
ccacaaattggagacaagtttgccagtcgtcacggtcagaagggtacctgtggtatccag
tacagacaagaggacatgccgttcacatgtgaaggaatcactccagatatcatcatcaac
cctcacgccatcccctccagaatgacagtcggccatttgatcgagtgcctgcaggggaag
gtgtccgctaacaaaggggagattggtgatgccacgccattcaatgatgctgtgaacgta
caaaaagtctccaacctgctgtcagaatatggttaccatctgagaggcaatgaggttctg
tataatggcttcaccggccgtaagctcacctctcagatcttcatcggacccacatactac
cagcgtctgaagcacatggtggatgataagatccactccagagcccgtggtccggtccag
atcctcaacagacagcccatggagggtagatcacgtgatggtgggctgcgttttggagag
atggaacgtgactgtcagatcgctcacggtgctgctcagttcctaaaagagaggcttttt
gaggcctctgacccataccaggtccacgtctgcaatttatgtggcctcatggccatcgca
aacacccgcacacacacctatgagtgcaggggctgccgcaacaagacacagatctctttg
gtgaggatgccgtatgcctgtaagctcttattccaggagctgatgtctatgagcattgcc
ccacggatgatgaccagctaa
DBGET
integrated database retrieval system
