KEGG   Cyprinus carpio (common carp): 109078689
Entry
109078689         CDS       T05134                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03020  RNA polymerase
ccar03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109078689 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    109078689 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccar03021]
    109078689 (polr2d)
   03400 DNA repair and recombination proteins [BR:ccar03400]
    109078689 (polr2d)
Transcription machinery [BR:ccar03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109078689 (polr2d)
DNA repair and recombination proteins [BR:ccar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109078689 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop Prismane
Other DBs
NCBI-GeneID: 109078689
NCBI-ProteinID: XP_018949446
UniProt: A0A8C1M9T6
LinkDB
Position
Unknown
AA seq 141 aa
MAAGAAAHVGDVEEDASQLMFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVF
MKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR
FEDEELQQILDDIQTKRSFQY
NT seq 426 nt   +upstreamnt  +downstreamnt
atggcggcaggagcagcagctcatgtgggagatgtggaggaggacgcgtctcagctcatg
tttcctaaagagtttgagaacgcagagaccctgctgaactcggaggtgcacatgttactg
gagcatcgcaagcagcagaacgagagcgcggaggacgagcaggagctgtccgaggtcttc
atgaagaccctcaactacacggccagattcagccgcttcaagaacagagagaccatcgcc
agcgtgcgcagcttgcttctgcagaagaagcttcataagtttgagctggcaagtttagcc
aatctgtgtccggaggcagcagaggaggccaaagccctcatccccagtttggaaggccgg
tttgaggacgaggagttacagcaaatcctggacgacattcagaccaaacgcagcttccag
tactga

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