Cyprinus carpio (common carp): 109102893
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Entry
109102893 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109102893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109102893
Enzymes [BR:
ccar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109102893
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109102893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
109102893
NCBI-ProteinID:
XP_018971779
LinkDB
All DBs
Position
28:17988820..18006765
Genome browser
AA seq
1560 aa
AA seq
DB search
MLFSKETPWRRLEGMSFGLFSADEIRKLSVKSITNSQLLDNVGNAAANGLYDLALGPADN
KEICSTCMQDFTSCPGHFGHVDLPLPVYNPMFLMXKLYLVIRGSCLGCHMLKCPRTAVHL
LLGQLKLLDVGAMKEVYELENVLNQLVEVNAQPSGIEIQEALEAFIAPILKANEDKQHSA
PIKHICEKKSSLINSFWRIHMGPRKCPNCRASRVTVRREHNSKLIVTHGSSTASTEKDDD
PLITKRGFLTPSLAREHVIKLWEKEGFFLKHLFAGFDMNNSEKGFSPEVFFLELLVVPPC
RYRPVNRLGDQMFTNGQTVNLQAVLKDNFMIQKLLALIAAEKTKAAEDTQTEMEQSSEST
EISQIDQTFLTGIQGLTLTDKLYNMWIHLQSHVNIVFDSDMDKLMTEKFPGVRQLLEKKD
GLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVL
NGPSVHPGASMVINEDGSRTILSSSNLTQREAVAKQLLTPSTGQHKIPMKIVNRHIKNGD
VLLLNRQPTLHRPSIQAHCARPARRESAQILPGEKVLRLHYANCKAVQRXLYGDEMNAHF
PQSELGRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTNMTVRGCFFTRDQYTALVY
RGLTDKIGRVKLLPPALFKPVPLWTGKQVVSTLLLNVIPENSIPLNLMGKAKIPSKAWVK
EPPRAVPGYRPETMCESQVVIRQGELLLGVLDKAHYGSSAYGLVHCCYELYGGETSGKLL
SCLARLFTAYLQLYRGFTLGVEDILVKDGANKQRRKIIQKSVTCGSKALQAAFNLPAAAG
DTEARERWQDAHLNTDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMV
QSGAKGSTVNTMQVIRKSKCLDEVLAKMDTGATFSHFKAIKRWKAKHERVSPRDGAFLLY
SQKKLSKLKSQIEDQTLANGRETATLQLLENWRALDESGRMKYLRVRLIVQTRVWLLYRP
VIRKSKCLDEVLAKMDTGATFSHFKAIKRWKAKHERVSPRDGAFLLYSQKKLSKLKSQIE
DQTLANGRETATLQLLENWRALDESGRMKYLKKTSHCPDPCLALYRPDICFGSVSETFDS
IVESYLDRFSVKQEFQTSSEIIDTDSRLREILMVASSNIKTPMMSIPVRMNKKALKRVKT
LRKKITRVCLSEVLHKVDVIETFRLVEKRRQKSRVFKLTFHFLPPERYQQDKLLTPDEIL
HFMEQKFFRMLLEAVKKLSAKLAAVNVVDTRKATANDNDRDAGGVADKEDDGDEDAENNR
IVDDEANEGDADATDSRRKEKQEEEVSEFTLSLNIFMVLLWMNSFEWLTLVLPLTKVHFD
LTSVVVKQAQNAVIMETKGITRCLLNEVTTKEGKKEMVLNTEGINMHEMFRHADILDLNR
LYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNR
FGIQSNSSPLQQMTFETSYKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGLFDLKQPL
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttcaaaagaaacgccatggaggcgattagagggcatgtcgtttggtttgttc
tccgccgatgaaataaggaagctgagtgtgaaaagtatcactaattcccaactgctggat
aatgtgggcaatgccgccgctaacgggctgtatgacctggcgctgggtccagctgataac
aaggagatctgctccacctgcatgcaagacttcaccagctgtcctggacacttcggtcac
gtagatctgccccttcccgtctacaaccctatgtttttgatgtaaaaattatatttggtc
atccggggttcatgcctgggatgccatatgttgaagtgtcccagaacggctgttcatttg
ctgctgggccagctgaagctcctggacgtgggtgcgatgaaggaggtgtatgagctagag
aacgttctcaatcagctggtggaggtcaatgctcagccgtctggaatagaaatccaagaa
gctctggaggcgttcattgcacccattctaaaagcaaatgaagacaagcagcacagtgcc
ccgatcaaacatatctgtgagaagaagtccagtctcattaacagtttctggagaatacac
atgggcccgaggaaatgtccgaactgcagagccagcagagtgactgtgcgcagagaacac
aacagcaaactcatcgtcacacatggatcatccacagcaagcacagaaaaggacgatgat
ccactgattaccaaacgtggattcttgaccccgagtttggcgcgagaacacgtcattaaa
ctctgggagaaagaaggtttcttcctgaagcatctgttcgcagggtttgatatgaataat
tcagagaaaggcttcagtcctgaagttttctttttggagttgcttgtggttcctccatgc
aggtacagacctgttaaccgtttgggagaccagatgttcaccaacggacagactgtgaac
ctgcaggccgtgttaaaggataatttcatgattcagaaactgctcgcactgatcgctgct
gagaagaccaaagctgctgaagacacacagacagagatggagcagtccagcgaatccaca
gagatcagtcagatagatcagaccttcttaacgggcatccaagggctgactctcacagac
aagctctataacatgtggatccacctgcagagtcacgtcaacatcgtgtttgacagcgac
atggacaaactgatgactgagaagttcccaggcgtccgtcagctcttggagaagaaagat
ggtttgttcaggaagcacatgatggggaagcgtgtggattacgctgcacgttcggtcatt
tgtcctgatatgtacatcggaaccaatgagattggaataccaatggtttttgctaccaag
ttgacgtacccacagccggtgacaccctggaacgtgaaggaactccggcaggcagtgctg
aatggacccagcgtccaccctggagcctccatggtcattaatgaagacgggtcccgaacc
atcctcagcagcagcaacctgacccagagagaagccgtggccaaacagctcctgaccccc
agcaccggccagcacaagatacccatgaagattgtaaatcggcacatcaagaatggggat
gtcctgctgctaaaccgtcagcccactctccacagaccatcaattcaggcccactgtgcc
cgccctgcccggagagaaagtgctcagatcctgcccggagagaaagtgctcagattacat
tacgccaactgtaaggccgtacaacgctgactttacggtgacgagatgaacgctcacttc
cctcagagtgagctgggcagagctgaggcctacacgctagtgagcacagaccagcagtac
ttggtgcctaaagatgggaagccattggcaggcctgattcaggaccacatggtgtctggc
accaacatgaccgtccgtggctgttttttcacacgggatcagtacactgcgctggtctac
agaggcctgacggacaagatcggcagagtgaagctcctgcctcccgcgctctttaaaccc
gtgcctctctggactggaaagcaggtggtgtcgacccttctgctgaatgtcatcccagaa
aacagcatcccattaaacctgatgggaaaagcaaagattcccagtaaagcctgggtgaag
gaacctcccagagctgttccaggatacaggccggaaactatgtgtgaatctcaggtggtc
attcgtcagggagaactcttgctgggagttctggataaagcccactatggcagctcagcg
tacggtttggtccactgctgctacgagctctacggaggagagaccagcggcaaactgctc
agctgtctggcacgactcttcactgcctacctgcagctgtaccgcggtttcaccttgggt
gtggaagacattctagtaaaagatggagccaacaaacagagaaggaaaattatccaaaag
tcagtcacatgtggctccaaggctctccaggctgcgtttaacctgcctgcagctgctgga
gacactgaagccagagagcgctggcaagatgctcatctgaacacagaccagcgagatttc
aacatggtggacctgaagtttaaagaggaggtcaatcaagtgaacaacaacatcaacaag
gtgtgcatgccgctgggtctccaccgctccttcccagaaaacaacctccagctgatggtg
cagtcaggagccaagggttccactgttaatactatgcaggtgatcagaaagtcaaagtgt
ttggatgaagttctggctaaaatggacacaggggcaacatttagtcactttaaggccatc
aagagatggaaagccaaacatgagcgtgtttcacccagagacggtgccttcctgctctac
tcgcagaagaaactgagcaagttgaagtctcaaatcgaagaccagacactggccaatggg
agagagacagcaactttacagctcttggagaattggagagctctggatgagtctggccgt
atgaagtatttaagagtacgtctcattgtccagacccgtgtctggcttctttaccggccg
gtgatcagaaagtcaaagtgtttggatgaagttctggctaaaatggacacaggggcaaca
tttagtcactttaaggccatcaagagatggaaagccaaacatgagcgtgtttcacccaga
gacggtgccttcctgctctactcgcagaagaaactgagcaagttgaagtctcaaatcgaa
gaccagacactggccaatgggagagagacagcaactttacagctcttggagaattggaga
gctctggatgagtctggccgtatgaagtatttaaagaagacgtctcattgtccagacccg
tgtctggctctttaccggccggacatctgcttcggttcagtttctgagacatttgactcc
attgttgagtcctacctggatcggttcagtgtcaagcaggaatttcagacctcctctgaa
atcattgacacagatagtagattaagagaaatactcatggttgcgagctctaacatcaaa
acccctatgatgagcattccagttcggatgaacaagaaagccttgaaacgtgtgaagacg
ctgcgaaagaagataactcgtgtgtgtttatcagaggtgcttcacaaagtggatgtcata
gaaactttccgcttggtcgagaaacggagacagaagtcacgagttttcaaactcacattc
cacttcctgcccccagagcgataccagcaagacaagctactcacccctgatgagattctt
catttcatggagcagaaattcttccgcatgctgctggaggccgttaagaagctgagtgct
aaactggcggctgtcaatgtggttgatacacgcaaagccacggcaaatgacaatgatcga
gatgctggtggcgtcgcggacaaagaggatgatggcgatgaggatgcagaaaacaacagg
attgtggatgatgaggcgaatgagggtgatgcagatgccacagattccaggagaaaagaa
aaacaagaagaggaggtatcagaattcaccctatctctaaatatattcatggtcttactg
tggatgaattcttttgagtggctaaccctggtcctacccctcactaaagtgcactttgac
ctcacgtcagtggtggtgaagcaggctcagaacgctgtcatcatggagaccaagggtatc
actcgctgcttattaaatgaagtcaccacaaaggagggcaaaaaagagatggtgctcaac
acagagggcatcaacatgcatgagatgttcagacatgctgatatcctggacttgaaccgg
ttatactccaacgaggttcatgctatggccaacacgtacggtattgaggtggccctcaga
gtcattgagaaggagattaaagatgtgtttgctgtctatggtatcgaggtggacccacgc
catctctctctagtggctgactacatgtgttttgagggggtgtacaagcctctaaacaga
tttggcattcaatccaacagttccccgctgcaacagatgacctttgagaccagttacaag
tttttaaagcaagcaacgatgctgggttcttatgacaaactcagttcaccctcggcttgc
ttggttgtaggaaaagttgtgaaaggaggaaccggcctcttcgatctgaaacagccatta
tag
DBGET
integrated database retrieval system
