Cynara cardunculus var. scolymus (artichoke): 112507232
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Entry
112507232 CDS
T05604
Name
(RefSeq) regulator of telomere elongation helicase 1 homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112507232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112507232
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112507232
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
112507232
FA (Fanconi anemia) pathway
Downstream FA components
112507232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
112507232
NCBI-ProteinID:
XP_024967486
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Position
LG 1:complement(49247619..49275272)
Genome browser
AA seq
1268 aa
AA seq
DB search
MEETVEMEAEAGYEEDDGDGAMEETVEMEAEGGCEEDDRDGANSIGNLRMKANHRRQSTH
TGEAMSSYRMPASNPNLNLKPSKKNVIHIGGIPIEFPYQPYGSQLAYMGRVIATLDRAQK
DGHFHALLESPTGTGKSLSLLCSVLAWQKNHRSKPQYGNISHSKPDPEALVDPLGHGGGF
VPEMEPSGNLMPTLSESNNTKQNKTRGPVIYYATRTHSQISQVISEFRKTNYHVPMAVLA
SRKRYCTNAKVRGQDNIDETCKLLLKERGQKKVGCPEFGNATKIRSHPSLKKGGCYEVHD
IEDLLKVGEMVEGCSYFGAQAMAEVAEIVFCPYSYIVNPQIRKAMEINVKGNIIILDEAH
NIEDVAREAGSIDAEEGVLIQLQMELENLCQSDRVTHADQVETYQPLYEMIEGIISWIRR
KKNSLGKHSFHHNASCWTADKALKELQEANISKQCFPSLQDCATKAIKFATDADPEVDYL
SGMPCTVLEGLFSSLSYFFSEDGKHICDYQLVLQCHIKNDAGLGASDWPCTFSLWCLNPA
LVFKNMADISLSVILTSGTLSPMSSFQSELGVQFGTCLEAPHVINVESQLWAGVIHSGPD
NYPLNASYKTSEDYGFQDALGTSLEEICKVVPGGCLVFFPSYKLMEKLRSRWSETGQWSR
LNAQKPIFVEPRGGQDDFENVLNGYYDTIHQKNKPMIGRRRGKRLDANSCNAARSKGNSR
TGAAFLAVCRGKVSEGIDFSDDNARAVIIVGIPFPNVFDIQVAEKKKYNDTYKSSKNLLS
GNEWYCQQAFRALNQAAGRCIRHRLDYGAVIFLDERFRKERNLTYISKWIRKSIRQYDNF
DQSLEGLKLFFKDIKVENDVNAMQQVDVETIDVEEPKNWFTEMKNQNVIKSKPKGQRSVM
NGVAAPEIATKMKKFAIATRKYDCSSPLSMNLSPNNFELSIVNETPRTDDGIAIDMTLPP
NDHEPCIVKETPIEDAGPTYLESVSEDEFSNSTIIQTKFPDQLLSHSFSSPCSTSASGCV
VTPKNEHGSQNRSPLDLSVNSHIHKRRKSSTSLVKMENFDSPETSSTTWSDVTKKEIKIS
CSLCRSSLGLVENNYIVPCSLTSSSKVHLTSIWKGKLENPSKGPTSVPIVVSDISSVDRR
IWERSSEGAIGQGIWSKEDGCVFNTILCPFCSNQDNCLGLHVVATDSSNVQFLNKVLFYS
DRLKIQHIDASRNKELSPSSVRSWSKSVVQHPFEKFAYVSQETNPGGWRTTKSKMRLPKK
AQISTIKH
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacggtggagatggaggcggaggcgggctatgaagaagacgatggagatgga
gccatggaggagacggtagagatggaggcggagggcggctgtgaagaagacgatagagat
ggagctaattctattggaaacctgaggatgaaggcaaaccaccggcgacaatctacacac
accggagaagctatgtcttcataccgaatgccggcgtcaaacccaaacctaaaccttaaa
ccctcgaaaaagaatgtcattcacatcggtggcataccaatcgagtttccgtaccaacca
tacggctcacagttggcttacatgggcagagtaatcgcaacactcgatcgagctcaaaaa
gacggccattttcatgccttacttgaatcacctactggtactgggaagtctttgtctctg
ctttgctcggttcttgcatggcagaagaatcatcggtcaaagcctcaatatggcaatatt
tctcactcgaaacctgatccggaggctctggttgatccgttgggtcacggtgggggtttt
gttcctgaaatggagccatcaggaaacctgatgcctactctttctgagtcaaacaatacg
aagcagaataaaacaagaggtcctgtcatctactatgccacgaggacacattcacaaatt
agtcaagtcatcagcgaatttcggaaaacaaattaccatgtgcctatggcagttttggca
tctagaaaacgctactgtacaaacgctaaagtacgtgggcaagataatattgacgagaca
tgtaagctacttctcaaggaacgtggacaaaagaaagttggttgccctgaatttgggaat
gcaaccaagatcagatcgcatccctctctcaaaaaaggtggctgctacgaagtccatgat
attgaagatcttcttaaagttggagaaatggtagaaggttgctcatattttggagcacaa
gccatggcagaagtggcagaaatagttttttgcccatacagctatattgttaatccacaa
attcgaaaagcgatggaaataaatgttaaaggaaatattatcattcttgatgaagctcat
aatatagaggatgtagctcgggaggctggtagtatagatgctgaagaaggtgttctgatt
caattacagatggaactagaaaatctttgtcaaagtgatcgagtaacacatgctgatcaa
gtggaaacttatcagcccttatatgaaatgatagagggtattatcagttggatcaggcgg
aagaaaaattccttggggaagcatagttttcaccataatgcgtcatgttggactgctgat
aaagctttgaaagaacttcaagaagcaaacatatcaaagcagtgcttcccaagcttacaa
gattgtgctacaaaggcaattaaatttgctacagatgcagacccagaggttgattactta
agtggcatgccctgcacagtattagaaggtcttttctcttcacttagctactttttctcg
gaagatggaaaacacatctgtgattatcagcttgtattgcaatgtcatataaaaaatgat
gctggacttggtgcttccgactggccttgtacttttagtttgtggtgcttgaatccagct
cttgtgttcaagaacatggctgatatttctctttcggtgattttaacatccgggactttg
tcaccaatgagctctttccaatctgaacttggggttcaattcgggacctgtcttgaagct
ccacatgttatcaatgtggagtcacagctatgggctggtgtgattcacagtgggccagat
aattacccactgaatgcaagttacaaaacatctgaggactatggtttccaggatgcactt
ggcacatctctggaagaaatttgcaaggtcgtccctggtggttgcttagtatttttcccg
agctataagcttatggagaaattgcgcagtcgatggtctgaaacaggtcaatggtctcga
ctaaatgcacagaagcccatctttgttgagccaagaggaggccaggatgattttgagaat
gttctgaatggttattatgatacaattcatcagaagaataaaccaatgattggaaggaga
aggggtaaaaggttggatgctaatagttgtaatgcagcaaggagcaaagggaactctagg
acgggagctgcatttcttgctgtctgtcgaggaaaggtctccgaaggaattgacttctct
gatgataatgctcgagcggttataattgtcgggattccttttccaaatgtgtttgatatc
caagtagcagaaaagaagaaatataatgatacatataaatcgtctaaaaaccttcttagt
ggcaacgaatggtattgtcagcaagctttccgagcactgaatcaagcagcaggtcgttgc
atccgacacagattggattatggagccgtaatcttcttagatgaacggttccgtaaagaa
agaaatttaacatacatttcaaagtggataaggaaatccattagacagtatgacaacttt
gaccagtcattggagggattaaagttatttttcaaagacataaaggttgagaatgatgta
aatgctatgcagcaggtcgatgttgaaaccattgatgtggaggagccaaaaaactggttc
acagaaatgaagaaccaaaatgtaattaaatccaaaccaaaaggacaaagatctgtgatg
aatggtgttgcagcacctgaaatagcaactaagatgaaaaagtttgcaattgcaactaga
aagtatgactgctcctcaccactgtcaatgaacttatctcctaataatttcgagctatca
attgttaacgaaaccccgaggactgacgatggtattgctattgatatgacattgccccct
aatgaccatgagccgtgtattgtgaaggaaacaccaatcgaggatgcgggtcctacttat
cttgaatctgtctctgaggatgagttctctaattcaaccataatccaaacaaagtttccg
gatcagctgttatcgcactctttttcctctccttgctctacttctgcttctggatgtgtg
gttactcctaaaaatgagcacgggtctcaaaacagatcacctttagatttgagtgtcaat
tcacatattcataaaagaagaaagtcttcaacttctctagttaagatggagaattttgat
tctccagagacatcatctaccacttggagtgatgttacaaagaaagaaataaaaatatct
tgttcactctgtcgaagttctctaggtcttgtagagaataactatattgttccttgttcc
ttaacgtcatcgtctaaagtgcacctgacatcaatttggaaaggcaagttggagaatcca
tcaaagggtccgacaagtgtacctattgtggtatctgacatttcatcagttgatcgaaga
atctgggaaagaagttctgaaggtgctattgggcaaggaatttggagtaaagaagatggt
tgtgtatttaatacaattctctgccctttctgcagtaatcaagacaattgccttggctta
catgtcgttgcaaccgattcatccaatgtgcagtttctaaacaaggtactcttttattct
gatagactgaaaatccaacatatcgatgcatcaaggaataaggaactctcgccatctagt
gttagaagttggagtaaaagcgttgtacagcatccatttgagaaatttgcatatgtatct
caagaaactaacccaggaggctggagaacaacaaaatcaaagatgcgactaccaaaaaaa
gcccagatttcgaccataaaacattga
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