Cynara cardunculus var. scolymus (artichoke): 112511088
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Entry
112511088 CDS
T05604
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03020
RNA polymerase
ccav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112511088
09124 Replication and repair
03420 Nucleotide excision repair
112511088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112511088
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112511088
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112511088
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112511088
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112511088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
112511088
NCBI-ProteinID:
XP_024972269
LinkDB
All DBs
Position
LG 4:11721825..11731351
Genome browser
AA seq
1840 aa
AA seq
DB search
MDIRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQAQKIRNPKNRLKKILDACKSKSKCEGGDEIDSQNQDTDEPVKKSRGGCGAQQPKITI
EGMKMVAEYKLQKKKSDDSEQLPEPAERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHSETETGHLTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRAAQDKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKIKKGEFDRLFRYEIDDENWNPSYMLPDHVEDLKTIREFRNVFDAEVQKLEADRVQ
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP
GDDQLSIEAQKNATLFFNILLRSTFSSKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PDVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMTTLIEEDVDFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP
EVEWMLDTEGVNLLAVMTHEDVDALRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALYLNEQMLQQAIDVQLPSYMDGLDIGMTPGRSPITPFH
DGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGFSPASSPGYSPSSPGYSPSSPGYSPTS
PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPTYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSP
SLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGAAPDYS
PSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGSRP
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggatatacggttcccgtactctcctgcagaagttgcaaaagtccggctggttcagttc
ggcatccttagtcccgatgaaattaggcaaatgtctgttgtgcatatagagcatggtgaa
actacagagagggggaagccgaaggtagctgggcttagtgatccgaggcttgggaccatt
gataggaagatgaaatgtgagacttgtatggctaatatggctgagtgccctggtcatttt
gggcatcttgagcttgcaaaacctatgtttcacattggatttatgaagaccgtactaagt
attatgagatgcgtgtgcttcaattgctccaaaatccttgcagacgaggaggatcataaa
ttcaagcaagcccaaaaaataagaaacccaaaaaataggcttaagaagatcttagatgcg
tgcaagagcaaaagtaaatgtgaaggcggtgatgagattgattctcaaaaccaggacact
gatgaaccggttaagaagagccgagggggttgtggggcccagcagccgaaaattaccatt
gaaggtatgaaaatggttgcagaatacaagcttcagaagaagaaaagtgatgattcagaa
cagcttcctgagccggctgaaagaaagcaacagctctctgccgaaagagttctgagcgta
ttaaagcggataagtgatgaagactgcatgttattgggcttgaatcccaaatatgctcgc
ccagattggatgatcctgcaggtccttccaataccgccacctccagtcagaccatctgtg
atgatggatacttcggctcggagtgaggacgacttaactcatcagctggccatgataatc
agacacaatgagaacctgagaaggcaagagaggaatggagctcctgcacacataatctct
gaatttgcccagttattgcagtttcatgttgccacatattttgacaatgagcttccgggc
cagccaagggctacacaacgctcaggtcgcccaatcaaatcaatatgcagtaggctcaag
gcaaaggagggtcgaatcagaggcaacctgatgggtaagcgtgttgatttttcggcacga
acggtcatcactccagatccaaccattaacattgatcaactgggagtaccatggagtatt
gctttaaatcttacttatcctgagacggtcactccttataacatagaaaggttgaaggag
ctcgttgagtacggtccccatcctccacctggtaaaactggagccaaatatattatcagg
gaagatggtcaaaggcttgatcttcgctacttgaagaaaagcagtgatcatcatctggag
tttggatacaaggtggagcgacacttaaatgatggagattttgtgctttttaatcgacaa
ccaagtctgcataagatgtccataatggggcataggattaagatcatgccatactccacc
ttccgattaaatttatcagtcacttcaccatataatgctgattttgatggagatgaaatg
aacatgcacgtacctcagtcatttgaaacaagagcagaggttctggagttgatgatggta
cctaaatgcattgtctcgcctcaagcaaatcggccagttatgggtattgtgcaggataca
ctcttaggttgccgtaaagtcaccaagagagataccttcattgagaaggatgtttttatg
aacatattgatgtggtgggaggattttgatggaaaagtacctacacctaccattttgaaa
cctagacctctatggacaggaaaacaggtgttcaatctcattattccaaagcagattaat
ctcattaggacagcagcttggcattcagaaactgaaactggacatttaacacctggtgat
acccaagttcgaatagagaagggagaggttatcactggcactctttgtaaaaaaaccctc
ggtgcatctacggggagtcttatacatgtcatctgggaggaggttgggccagatgccgct
cgcaagttccttggacatacccagtggcttgttaactactggcttttgcaacaaggtttc
agcatcggtattggagacacaattgctgatgcagcaactatggaaacgatcaatgaaact
atttccaaagccaagaacgaggtgaaagaacttattagagctgcccaagataagcaattg
gaggcagagcctggtcgaaccatgatggagtcattcgaaaatagagtgaatcaggtgctg
aacaaggctcgtgatgacgcaggaagtagtgcccagaaaagtttatcagaaagcaacaat
ctcaaggctatggtcacagcaggttcaaaaggaagtttcatcaatatatcacaaatgact
gcttgtgtgggacagcagaatgttgaggggaagcgaattccatatggcttcatagatcgg
actcttcctcatttcacaaaggatgattatggacctgaaagtcgtgggtttgtagagaac
tcttatctacgagggctaactccacaggagttcttttttcatgcaatgggtggtagagaa
ggtctgattgatactgcagtgaaaacatctgaaactggttatattcaacggcgattggta
aaagctatggaagatatcatggtgaagtatgatggtactgtcaggaactctctgggggat
gttatccaatttctttatggggaagacggtatggatgcagtttggatagagactcagaaa
cttgattctctcaaaattaagaagggggagtttgatcgactttttaggtatgagattgat
gacgaaaactggaatccaagttacatgctgccagatcatgttgaggatctgaaaactatt
agggagttccgtaatgtgtttgatgctgaagtacaaaaacttgaagctgatcgagtccag
cttggaacagagattgctactacaggtgataattcgtggccaatgcctgtgaatctcaaa
aggcttatttggaatgcacagaagacatttaaggtcgatttgaggaggccttcagatatg
cacccaatggaaattgtggaagctgttgataaacttcaggagaggctaagggttgttcct
ggtgatgatcagttgagcattgaagctcaaaagaatgccactctttttttcaacattctc
cttcgtagcacattttctagcaagagggtgttgagtgagtacaggcttactcgtgaggca
tttgaatgggttattggtgagatagagtcaaggtttttacagtcgctcgttgcacctgga
gaaatgattggatgtgttgccgcacagtctattggtgagccagccacacaaatgactctt
aacacctttcactatgctggtgtgagtgcgaagaatgtcactcttggtgttcccagattg
agagaaattattaatgttgccaaaaagatcaaaaccccttcgctatctgtctatttgaaa
cctgatgttagcaagacaaaggatagggccaagaatgttcagtgtgctctggaatacacg
acactgcgtagtgtgactcaagctactgaagtatggtatgacccggatcctatgactact
cttatagaagaggatgttgattttgtcaaatcatactatgaaatgccagatgaagaaatt
gacccagataagatatctccttggctactgcgtatcgagttaaatcgggagatgatggtt
gataagaagttgagcatggctgatattgctgagaagattaatctcgagtttgatgatgat
ttaacctgtatattcaatgatgacaatgctgagaagttgattctgcgaatacgtatcatg
aatgatgaggcccccaaaggcgagttacaagatgaatctgctgaagatgacgtcttcctc
aagaaaatcgaaagtaatatgctgacagaaatggccctacgtggcattcctgatattaac
aaggtgttcattaaatcaggcaaagttaacaaattcgatgagaatgaaggattcaagcca
gaagttgaatggatgcttgatactgaaggtgtaaatctgttggctgttatgacacatgag
gatgttgatgccttgagaacaactagtaatcatttgattgaggtgattgaagttcttggg
atagaagctgttcggaggtccttgctggacgagcttcgagtggtcatttcttttgatggt
tcctatgtaaattataggcatttggctatattatgtgataccatgacctatcgtggtcac
cttatggccataacacgtcatgggatcaataggaatgacacagggccaatgatgagatgc
tcatttgaggaaacggtcgacattcttcttgacgctgctgtgtatgcagagacagattac
cttcgaggagttactgaaaatataatgttaggccagcttgctcctataggcacaggagat
tgtgctctgtatttgaacgagcaaatgctacagcaagctattgacgttcagctcccaagt
tatatggatggtcttgacattggaatgacacctggccgctctccaattactcctttccat
gatggtgcaatgtctcccactaattatctgctgagcccaaatctacgattgtcaccgatt
aatgatgcacaattttcaccttatgttggtgggatgggcttttctccggcatcgtcacct
gggtacagtccgtcttctccaggatacagcccttcatctcctggctatagccctacctca
cccggctatagcccgacctctcctggatatagtcctacatcacctggttatagtccgacc
tcgccaacatacagtccaagttcgcctggttatagtccaaccagtcctacctactccccc
acctctcccagctactcccccacatctcccagctactcccccacatctcccagctactcc
ccaacctctccgagttactcacccacatcgcctagttacagcccaacgtctcctgcctac
agccccacctcaccagcatacagccccacctcgccagcatacagccccacctcgccatca
tacagccccacctcgccatcgtacagccccacctcgccatcgtacagccccacctcacca
tcatacagccccacctcgccatcatacagccccacctccccatcatacagccccacctca
cctgcttacagccctacttcccctggctacagtcctacttcacctagctacagtcctact
tcacctagctacagtccaacctcaccaagctataatccgtcatcagccaagtacagcccg
tcactggcttattctcctagtagtccaagactatcgccttcaagtccatatagccctaca
tcgccgaactacagtcccacatcgccatcatattctccaacgtctccatcttattctcct
tcaagccctacatacagtcccagcagtccttacaactccggtgcggctcctgactacagc
ccaagctcaccacagtacagtccgagtgctgggtattcgcctagtgcaccggggtattca
ccatcatcgacaagccagtatactccacaaatgagcaataaggacaatgggtcgaggccg
tag
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integrated database retrieval system
