KEGG   Cynara cardunculus var. scolymus (artichoke): 112511727
Entry
112511727         CDS       T05604                                 
Name
(RefSeq) DNA-directed RNA polymerases II and V subunit 6B-like
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03020  RNA polymerase
ccav03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112511727
  09124 Replication and repair
   03420 Nucleotide excision repair
    112511727
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccav03021]
    112511727
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112511727
Transcription machinery [BR:ccav03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     112511727
  RNA polymerase III system
   RNA polymerase III
     112511727
  RNA polymerase I system
   RNA polymerase I
     112511727
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      112511727
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 112511727
NCBI-ProteinID: XP_024973214
LinkDB
Position
LG 4:complement(6186711..6193774)
AA seq 145 aa
MADDDFDMDAGGYDDEPVEPELDEGAEEDIDADNKEEDVPDPLVGDNEDKEEPEAVEKPR
KTIKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLP
DGSYEDWGVDELIVEDSWKRQVGGD
NT seq 438 nt   +upstreamnt  +downstreamnt
atggccgatgatgactttgatatggacgccggaggatacgacgacgagccagtcgagccc
gaactcgatgaaggggctgaggaagatattgatgcagataacaaggaagaagatgttcca
gatccacttgtaggtgataatgaagataaggaagaaccggaagctgtagaaaaacctagg
aagactataaaatatatgaccaaatatgaaagggctagaattctgggtactcgtgccctg
caaattagcatgaatgctccagtgatggttgagttggagggtgaaactgacccccttgag
attgccatgaaggagcttagacagcggaagatccccttcaccattcgtcggtacctgcct
gatggaagttacgaggactggggagtcgatgagttaattgtggaggattcttggaagcga
caggttggtggagactag

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