Cynara cardunculus var. scolymus (artichoke): 112524445
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Entry
112524445 CDS
T05604
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112524445
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112524445
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524445
03036 Chromosome and associated proteins [BR:
ccav03036
]
112524445
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
112524445
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
112524445
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
112524445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
HEAT_EZ
Vac14_Fab1_bd
Htt_N-HEAT_1
PDS5
RTP1_C1
Adaptin_N
Cnd1
CLASP_N
IFRD
Motif
Other DBs
NCBI-GeneID:
112524445
NCBI-ProteinID:
XP_024990030
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All DBs
Position
LG 13:5593416..5602547
Genome browser
AA seq
587 aa
AA seq
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MSMADEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMRET
DLVDWFVPLVKRLAAGEWFTARVSACGLFHIAYPSSSETLKAELRSVFSQLCQDDMPMVR
RAAATNLGKFAATVEPAHLKADIMQIFEDLTQDDQDSVRLLAVEGCASLGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTKTDLVPAYVRLLRDNEAEVRIAA
AGKVTKFSRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGGLCMQWLQDKVYSIRDAASNNLKRLAEEFGPDWAMQHIVPQV
LDMINNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVVNVSKDRVPNIKFNVAKVLQS
LIPIVEQSVVEKTIRPCLVELAEDPDVDVRYFASQALQSIDQVMMSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggctgatgaacctttgtaccccatagcggtattgatagacgagctgaagaac
gatgatatccaattgcgcttaaattccattagaaggctatctacaattgctcgtgctcta
ggagaggagcggacacgaaaggaattgattcctttcttgagtgaaaacaatgacgacgac
gacgaggttcttcttgctatggcagaggagttgggggtgttcattccttatgttggagga
gtggagcatgcccatgtgttgctaccccctcttgaaacactatgcactgttgaagagaca
tgtgtaagggacaaagctgtggagtcgctatgcagaattggagcacagatgagagagact
gatttggttgattggttcgtacctctggttaagaggctggcagctggtgaatggtttacc
gctcgggtttctgcttgtggactgtttcacattgcttatcctagttcctcagagacgttg
aaggcagaattgaggtcagtatttagtcagttatgtcaagatgacatgcctatggtcagg
agagctgctgcaacaaacttggggaaatttgctgctactgtggagcctgctcatctcaag
gctgacatcatgcaaatatttgaggatcttacgcaggatgatcaagattctgttcgttta
ctagctgttgagggttgtgcttcccttggaaagttgttagaaccccaggactgtgttgca
cacattcttcctgtcattgttaatttttctcaggacaagtcttggcgtgttcgctatatg
gttgctaatcagttgtacgaactatgtgaagctgtgggccctgaacctactaagacggac
ttggttccagcatatgtgaggctacttcgggacaatgaagctgaagtacgtattgcagct
gctggaaaggtcaccaagttcagtcggattcttaatccagaacttgcaattcagcatatt
cttccatgtgtaaaggagttatcatcagattcttctcagcatgttcggtctgctctggct
tctgttataatgggcatggcccctgttctaggaaaggatgcaacgattgagcaacttctt
cctatatttctttcacttctaaaggacgagtttccagatgtacgcctcaatattattagt
aagcttgatcaagtgaatcaggttatcggaatcgatcttttgtcccaatctttgttacca
gcaattgttgaacttgcggaagataggcattggagggttcgtttggcaattatagagtac
atacccctattggctagtcagttaggtgtaggattctttgacgataagcttggtggtctc
tgcatgcaatggttacaggacaaggtttactccatcagagatgctgcttctaataactta
aaacgccttgcagaggaattcggtccagattgggctatgcagcacatcgtcccacaggtc
ctggatatgattaacaacccccattacttgtatcgcatgacaattcttcgtgctatttct
ctacttgcccctgttatgggatcagaaatcacttgttctaaattgcttcctgtagttgtt
aacgtctccaaagacagagtgccgaatatcaagtttaatgtggcaaaggtcttgcaatcg
ctaattcctatagttgagcagtctgtggtagagaaaaccattcggccgtgcctggttgag
ctggcagaggaccctgatgtcgatgttcgttattttgccagccaagctcttcaatccatt
gatcaagtcatgatgtctagctag
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