Cynara cardunculus var. scolymus (artichoke): 112525397
Help
Entry
112525397 CDS
T05604
Name
(RefSeq) ABC transporter D family member 1 isoform X1
KO
K25819
ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter [EC:
7.6.2.4
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav02010
ABC transporters
ccav04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112525397
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
112525397
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112525397
Enzymes [BR:
ccav01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
112525397
Transporters [BR:
ccav02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
Others
112525397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
AAA_29
AAA_23
SMC_N
AAA_16
nSTAND1
FtsK_SpoIIIE
dsDNA_bind
Motif
Other DBs
NCBI-GeneID:
112525397
NCBI-ProteinID:
XP_024991282
LinkDB
All DBs
Position
LG 13:14832352..14858601
Genome browser
AA seq
1334 aa
AA seq
DB search
MTSLQLLQLTERGRSLISGRRRTLLLATGIIVAGGTAAYVQSHGRGRRPSGTGQSNGLGD
EDEQAELDVGNNSVIRRSRQKKGLKSLQVLAAILLSHMGRMGARDLLALLATVVLRTAVS
NRLAKVQGFLFRAAFLRRVPAFVQLILENITLCFVQSALNSTSKYITGTLSLRFRKILTK
LIHAQYFQNMIYYKMSHVDGRITNPEQRIASDVPRFCSELSDLVQEDLTAVTDGLLYSWR
LCSYASPKYIVWILAYVLGAGATIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIA
FYGGETREESHIQQKFKALVHHLKVVLHDHWWFGMVQDFLLKYLGATVAVILIIEPFFSG
TLRPDTSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGFADRIHELMAISR
ELSPKDVPSLQRRGSKNYITQADYIEFDGVKVVTPSGNVLVEDLTLKVESGSNLLITGPN
GSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTAD
QEVEPLTHSKMVELLKNVDLEYLLNRYPPEKEINWGEELSLGEQQRLGMARLFYHKPRFA
ILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWRVHDKRE
DSRVRSGTDIEFVKLKSSETERQSDAMAVQRAFATRNDSAFSSSKSQSYFSELIAASPAE
DLSTLLPVVPQLQNDPRALPLRIAAMFKILVPTVLDKQGAQLLAVAVLVVSRTLISDRIA
SLNGTTVKYVLEQDKASFIRLIGFSVLQSAASSFVAPSLRHLTARLALGWRIRLTSHLLK
NYLRKNAYYKVFHMSGDTIDADQRLTQDLEKLSTDLSGLVTGMVKPSVDILWFTWRMKLL
TGRRGVAILYAYMLLGLGFLRSVTPDFGDLGNREQELEGSFRFMHERLRTHAESVAFFGG
GAREKAMIESRFNELLVHANILLRRRWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKADR
SLTSTQGELAHALRFLASVVSQSFLAFGDILELHRKFIELSGGVNRIFELEELLDAAQSD
ETVGTSSQSDEMHEESDDSISFSEVDIITPSQKLLARKLTCDIVPGKSLLLTGPNGSGKS
SVFRVLRGLWPIADGRLVKPCHNVNDEVESGCGILYIPQKPYTCLGTLRDQIIYPLSHEQ
AKQRALNLYQGGQIDVNILDTHLKTILESVKLSYLFEREGRWDASQNWEDILSLGEQQRL
GMARLFFHKPRFGVLDECTNATSVDVEEHLYRLARDMGITVITSSQRPALIPFHSLELRL
IDGEGKWELRSIKQ
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgacttctcttcagctattacagttgacggagcggggtcgtagcctgatttcgggtcgc
aggagaacattattgctggccactggcattatagttgctggtgggactgctgcatatgtg
caatcacatggcaggggtagaaggcccagtggaactggtcaatccaatggattgggagat
gaagatgaacaagcagagttggatgttgggaacaatagtgttattagaagaagtaggcaa
aagaaaggactaaaatcgctccaggttctggctgcaattctcttatcccatatggggagg
atgggtgcaagggatcttttggcacttttggccacagtggtgttacgaactgctgtgagc
aataggttagcgaaagttcaaggatttctatttcgtgctgcttttcttcgacgcgtaccg
gcctttgttcagttgattcttgaaaacattaccttatgttttgttcaatcagctttgaat
tctacatcgaagtatataacagggaccttaagcttgaggttcagaaaaatactaacaaag
cttattcatgcacaatattttcagaacatgatatactacaaaatgtcccatgttgatggc
cgaataactaatcctgagcaaagaatagcgagcgatgtaccaaggttctgctcagaattg
agtgatcttgtacaggaagatcttactgcagttactgacggcctgctatattcctggcgc
ctgtgttcttatgcaagcccaaagtatatagtttggatattggcttacgtgctaggagca
ggagccaccatcagaaatttctctcctgcatttggtaaattgatgtctaaagaacaacaa
cttgaaggtgagtatagacaacttcattcaaggttgaggactcatgcagaaagcatagca
ttttatggtggtgaaactagagaagaatcccatattcagcagaagtttaaggcacttgtc
catcatttgaaagttgtccttcacgaccattggtggtttggcatggttcaggatttctta
ttgaagtatcttggtgctactgttgctgttatcctaatcatagagcctttcttttctggc
actttgagaccggacacctcaacattaggacgggcagagatgttgagcaatctgagatac
cataccagtgtgataatatcactatttcagtccttgggaactctttccataagttccaga
cggcttaatcgtctaagtggctttgcagatcgtattcacgaacttatggctatatctaga
gagttaagtccaaaagatgtaccgtctttgcaaaggagagggagtaagaattatataact
caggcagactacatagagtttgatggagtgaaggtggttactccaagtggcaatgttttg
gtggaagacttgactttaaaggtcgaatcagggtctaatcttttaatcacaggaccaaat
ggtagtggcaaaagctcactgttccgagttttgggaggcttatggccgttggtgtctgga
catattgtaaaacctggggttggttctgatctcaataaagagattttctatgttccccaa
cgaccgtatacagctgtaggaacactacgtgaccagttgatatatcctcttactgcggat
caagaagttgaacctctcacccacagcaaaatggttgagctattgaaaaatgttgacctt
gagtatttattaaatcgttatccacctgaaaaagagataaattggggtgaggagttgtct
cttggggagcaacaaagactgggaatggcaaggcttttctatcacaaacccagatttgca
attcttgatgaatgtaccagtgccgtgacaactgatatggaagaacgcttttgtgccaaa
gtccgagcaatgggaacatcatgcatcactatatctcaccggcctgctcttgttgcgttc
catgatgtggtactgtcgttggatggggaagggggttggagagttcacgacaaaagggag
gattcccgtgtccgtagtggtactgatatcgaatttgttaaattgaagtcatctgaaaca
gaacgtcaaagtgacgcaatggcagttcaacgtgcatttgctacaagaaatgattctgct
ttttccagttcaaagtctcagtcatatttttctgagttaatagctgcgtctccagctgag
gatcttagtaccttgttgcctgttgtcccacaactgcaaaatgatccccgggcattgcca
ttaagaattgctgccatgtttaaaatactggtgcccacagtacttgataagcagggagca
caacttcttgctgttgccgttcttgtggtctcaagaactttaatatcagatcgtatagct
tctttaaatggaacaaccgtgaaatatgttttggagcaagataaagcatcctttatacgg
ttgattggctttagtgtccttcaaagtgctgcttcttcatttgtcgcaccttctttaagg
cacttgactgccaggcttgcacttggatggaggattcgcttgacttcacacttactgaag
aattacctgaggaagaatgcgtattacaaggtatttcacatgtcaggagataccattgat
gcagatcagagactaacacaagatctggaaaagttaagcactgatttgtcagggttggtt
acaggaatggtaaagccatctgtcgacattttatggttcacgtggaggatgaagttgtta
acaggtcgccgcggtgttgctatactatatgcatacatgctactaggtttaggctttcta
aggagtgtcactccagattttggtgatctaggaaatcgagaacaagaactcgaagggagc
tttaggttcatgcacgagaggctgcgtacccatgctgaatctgttgctttcttcggaggt
ggtgctcgagaaaaagcgatgatcgagtcaagatttaatgagcttcttgttcatgcgaat
atacttctaaggaggagatggttatttggcatactagatgactttgtcacaaaacaacta
cctcacaatgttacctggggattgagcttgctatatgctatggagcacaaagctgaccgt
tcattgacttccactcaaggtgagctggcacatgcattgcggtttttggcatctgttgta
tctcaaagcttcttggcatttggtgacattttggagctgcacagaaagttcattgaactc
tctggtggtgttaatcgtattttcgaacttgaagagcttcttgatgctgcacaatctgat
gagactgttggtacttcatcgcagtctgatgagatgcacgaggaatctgatgatagtatc
tctttttctgaggttgatattattaccccatcacagaaattattggcccggaaattgaca
tgtgatatagtaccagggaaaagccttcttcttactggtccaaatgggagcggtaaaagt
tccgtgttcagggttctccgaggtctttggcctatagccgatggacgacttgttaaaccg
tgccacaatgttaatgacgaggttgaatctggttgtggcatattatacatccctcaaaag
ccatatacttgtttggggacattacgagatcaaattatatatcctctctcgcatgagcaa
gcaaagcaaagggcattaaatttgtatcaaggagggcaaatagatgtaaacattttggat
acgcatctgaaaacgattttagagagtgtgaaattatcttaccttttcgaaagagaaggg
agatgggatgctagtcagaactgggaagatatcctgtctcttggggaacaacagagatta
ggcatggctcgcttattctttcacaagcctcggtttggcgtccttgatgaatgcaccaat
gctacaagtgtcgatgttgaagagcacttgtataggcttgcacgcgatatgggcatcact
gttattacatcatcacagcgccctgcattaataccctttcactcgttggagttacgatta
attgacggtgaaggcaaatgggagcttcgatcaatcaaacaatga
DBGET
integrated database retrieval system
