Cephus cinctus (wheat stem sawfly): 107265225
Help
Entry
107265225 CDS
T07523
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03020
RNA polymerase
ccin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107265225
09124 Replication and repair
03420 Nucleotide excision repair
107265225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccin03021
]
107265225
03400 DNA repair and recombination proteins [BR:
ccin03400
]
107265225
Enzymes [BR:
ccin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107265225
Transcription machinery [BR:
ccin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107265225
DNA repair and recombination proteins [BR:
ccin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107265225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
107265225
NCBI-ProteinID:
XP_015589943
LinkDB
All DBs
Position
Unknown
AA seq
1906 aa
AA seq
DB search
MATSDSKAPIRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNAK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKEGQEIQTAERKPGHGGCGRYQ
PNLRRSGLDVSAEWKHVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLSDIIKSNNELLRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDEGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFSEDIVREMMGSGEVISELEREWEQLNKDRAVLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLEKCIIVAGEDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDTK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITDTGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGGAGMFFGNAQT
PSMSPQMTPWNQMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAFLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFASTSPQYTPAS
PTYSPTSPTYSPTSPSYSPSSPQHTAAGSTRYSPSSPNYSPTSPTYSPSSPQYSPSSTKY
SPTSPTYTPTSPNYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtccgactcgaaagcccctatacgaacagtgaaaagagtgcagtttgggatc
ctttctccagatgaaatacgtcgcatgtcagttaccgatggcggcatacgtttcccagag
accatggaaggtggtcgtcctaagcttggaggacttatggatccaaggcaaggtgtcatt
gatagaaattcacgatgtcagacatgtgctggcaacatgaccgagtgcccagggcacttt
ggccatatagatctagccaaacctgtctttcatgtgggatttatcacaaagagcataaaa
attcttagatgcgtttgcttctattgttccaaactgcttgtcagtccccacaatgcaaaa
attaaggaaattgtaatgaagacaaagggacaaccacgcaaacgactcacatttgtatat
gacttgtgcaaaagtaaaaatatttgtgagggtggcgatgaaatggacataaataaagaa
ggacaggagatacagacagctgagagaaaacctggtcatggtggatgtggtcgatatcaa
ccaaacttgagaaggtcaggcttagatgtttcagctgaatggaaacatgtgaatgaagac
tctcaggagaaaaagatagttcttactgctgaaagggcatgggagatcctgaagcacatt
accgatgaggagtcattcatccttggtatggatccaaaatttgctcgtccagactggatg
gttgtaactgtattgccagtgccaccactttcggtacgacctgctgttatcatgtatggc
tcagcaaagaatcaggacgacttgactcacaaattgtcggatatcatcaagtcgaataat
gaactcctgaggaacgagcaggctggtgcagctgctcacgtaatttccgaaaacattaaa
atgctgcagtttcacgtcgcaacattggtggacaatgatatgccaggaatgccaagagct
atgcaaaaatctgggaaaccattaaaggccataaaatctagattgaagggtaaggaaggt
cggatacgaggaaacctcatggggaaacgtgtcgatttctccgcacgtacagttatcaca
ccggatcccaatctgcgaatcgatcaagttggtgtaccacgcagcatcgcacaaaatcta
acctttccagaaatcgtgacaccttttaatattgataaaatgcaagaactcgttcgcaga
ggaaactcacaatatcctggagcgaaatatattgtgagagacaacggagagagaatagat
ttaagatttcatccgaaaccatccgatttgcacttgcagtgcggctatagagtagaaaga
catataagggatggcgatctggtgatattcaatcgtcagccgactcttcacaagatgagt
atgatgggtcacagagtgaaggttcttccttggagtacattccgaatgaatctcagttgt
acgtcaccgtacaacgcggacttcgacggagacgaaatgaacctgcacgttccacaatcg
atggagacgcgtgcggaagtcgagaacattcatgtgacaccgcgtcagattatcactccg
caggcaaacaaacccgtcatgggtatcgtgcaggatacgctgacagctgttagaaaaatg
acaaaacgtgacgtcttcatagagaaggaacagatgatgaatattctcatgttcttgccg
agttgggatggaaaaatgccgcagccttgcattctaaagccaaaacctctgtggacggga
aaacagatattctcattgattattcccggaaacgtgaacatgatccggactcacagtaca
catcctgacgaggaagacgaaggtccttacaagtggatttcaccgggagatacaaaagta
atggtagagcacggtgaattggttatgggcattctgtgtaagaagactttgggaacttcc
gccggatctttgcttcacatttgtatgctcgagcttggacatgatgtttgcggccgattt
tacggaaatattcagactgtaattaacaactggcttctattggagggacattctatcggt
atcggtgacaccattgctgaccctcagacctatttggagattcagaaagccattaagaaa
gccaaagaagacgtgatagaagttattcaaaaggcacacaatatggagctggaaccgaca
ccgggtaacacactaaggcagaccttcgaaaatcaggtaaacaggatcctgaacgacgct
cgtgataagaccggaggctccgccaagaagtcactcacggaatacaacaatttgaaagcc
atggtggtctcaggttccaaaggatcgaacattaatatctctcaggttatcgcttgtgtc
ggtcaacagaacgtagaaggtaaacgaattcctttcggttttcgaaaacgcactttgcca
catttcatcaaggacgattacggtcccgagtccagaggattcgttgagaattcgtatctc
gccggcctcacgccgtccgaattttattttcacgcgatgggaggtcgcgaaggtctcatc
gataccgccgtaaagactgccgagactggatacattcaacgtcgtctgataaaggctatg
gagtcagtgatggtgcactacgatggaaccgtaaggaattctgtcggccaactcattcaa
ttgcgttatggcgaggacggtctgtgcggcgagaccgttgaattccaaaatttaccaact
attaagttgagcaacaaagcatttgagaagaaattcaaatttgatccaaccaacgagcgc
taccttcgacgtatcttcagcgaggacatcgttcgcgagatgatggggtccggagaagtc
atctcggaattggaacgagagtgggaacagttgaacaaggatcgtgcagttcttcgtgaa
attttcccaagtggggaatcgaaggtcgtacttccctgcaacttgcagagaatgatttgg
aacgtgcaaaagattttccacatcaacaagagggctcccacggacttgagtccaatgcgt
gtcatacagggtgtcaaggatctgctggaaaagtgcatcatcgtggctggtgaggacaga
ctgagtaagcaggccaatgagaacgctactcttttattccagtgtctagtgagatccact
ctctgcaccaagtgcgtctccgaggaattccgattatccagtgaagcattcgagtggctc
atcggagagattgaaacaagattccagcaagcacaggtgtcgccaggagaaatggtgggt
gccttggcagctcaatctcttggtgagcctgccacccagatgacactcaacactttccac
tttgctggtgtctcgtcgaagaacgtaacattgggtgtacccaggctcaaggaaatcata
aatattagtaagaaacctaaggccccatcacttactgtcttcctaactggcgccgctgcc
agagacgctgaaaaagcgaagaacgttctctgtcgtctggaacacacgaccctgaggaaa
gtgacagccaacacggccatctattatgatccggatccgcagaatactgtcattgcggaa
gatcaggaattcgtaaatgtttactacgagatgcccgactttgatcctacgaagatatcg
ccttggcttctgcgtatagaattggatcgtaagaggatgactgataagaaattgactatg
gagcaaattgcggaaaaaatcaatgccggtttcggtgatgacttgaactgtatatttaat
gacgataacgctgagaagttggtattgcgtatcagaataatgaacagcgatgacaccaaa
ttccaagatacagaagaagaaacggttgacaagatggaggatgacatgtttctgagatgt
atcgaagctaatatgttgagtgacatgacgcttcaaggtatcgaggctatcggcaaagtc
tacatgcatttgccacagacagatgcaaagaagcgaatcgtcattaccgacactggagag
tttaaagctattgccgaatggctattagaaactgatggaaccagcttgatgaaagttttg
agcgaacgcgacgttgatccggtgagaaccttcagcaacgacatttgcgagatattccaa
gtactgggaatcgaggctgtacgaaaatccgtggagaaggaaatgaatgctgtcttacag
ttctacggtctttacgtaaattatcgacatcttgctttgctttgtgacgttatgactgct
aaaggtcatcttatggctatcacacgtcacggaatcaacaggcaggacacaggagcgctt
atgagatgttctttcgaggaaactgtcgacgttttattagacgctgcgtctcacgcagaa
gttgatccaatgagaggcgtttccgagaacatcattatgggacaattaccacgaattgga
acagggtgctttgatttgttactggacgctgagaaatgtaaggcgggtattgaaatacca
atggccgtcggtgctggagttatgggtggtgctggaatgttcttcggtaatgcccaaacg
ccaagcatgagtccacaaatgacgccatggaatcagatgggtgccacgcctggttacggt
gcatctagtatgtctccggctttgggtagcggtatgacacctggcggtgcctgcttttcg
ccttccggggcatcggatgcctctggattgtctccagcatattcagcctattcgccgcag
ccgggaagtcctggaagtccaggaccaagtatgagtccatatccaatgtcgccagcgggt
ggtgcatctccgagctattcgccgacctcgccggcttttctgcccacatcgccgagtatg
acaccatcgagtccgaactattcacctaccagtcccacctattcacctacaagtccaaac
tactcacctacgagtcctagctactcgccaacgagtcctagctactctcctacgagtccc
agttattctccaacgagtcccagctattctcccacgagtccaagttactcaccgacgagt
ccaagttactcgccaaccagtccaagctattctccaacgagtccaagttactcaccgaca
agtcctagttactcgccgacgagtccaagctactcacccacgagtccaagctactcgcct
acgagtcctagctattcgcctacaagtcctagttattctccgacgagtcctagttactcg
cctacaagtccgagctattcaccaacgagtccgagctattcgccaagttcaccaaattac
actccggcctcgccatcttactcgcctaccagtccatcgtattcgccaagttctccacag
tactcacctgcaagtccaagctactcgccaagtagtccgaaatattcaccgacgagtccg
agctactcgcccacatctccttcattcgctagtacttcaccacagtacacaccagccagt
ccaacgtactctccaacgagtccaacatattctccgacaagtccatcgtactcgcctagc
tcaccgcaacacacggcagcaggaagtacgagatactcgccaagtagtcccaactactca
ccaacaagtcccacgtattcgccatccagtcctcagtactcaccatcaagtacaaagtac
tcgccaaccagtcccacatatacaccaacaagtccaaattactctccgactagtccgact
tattcaccacctgtcccaggctattcaccgactagtcctacctattcgccagcctcacca
gcctacgaaacagatgattaa
DBGET
integrated database retrieval system
