Coregonus clupeaformis (lake whitefish): 121533043
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Entry
121533043 CDS
T08357
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3B
KO
K05214
glutamate receptor ionotropic, NMDA 3B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04020
Calcium signaling pathway
cclu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121533043
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121533043
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121533043
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Glutamate (ionotropic)
121533043
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GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
121533043
NCBI-ProteinID:
XP_045062233
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Position
22:1687753..1710559
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AA seq
1152 aa
AA seq
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AVVCPGWEERREGLLKHLETQRGTSWNLLDIINLSHIGGEERGKEERREERREEERGAER
SEETSDETREDKREAEVLSLLSRRLLLSASPLSSVVILGSDPECLSSVLRCAQRLAPSFP
TLQWIMGNPLSPDNLLSLGGPLGLLAYGEVGRKPITFYIRDALRLIGQAVTSASEVRPDL
ALIQNLVNCYDKPNKEEVPSSGQYLARFLSNTSFQGATGAVRVAPALSQVLSSQLYHVWS
LKRGPLGQPSWVTVAHWTTGRLQLDEGRGDRERDNSPGGRWRPGLKMEGRRLRVVTLVEH
PFVFTREVDEDGLCPAGQLCLDPRTNRSDRLDSLFSQLHQTNPTEDLRKCCYGYVIDLLE
KLAEDLKFTFDLYIVGDGKYGALSSTGRWTGLVGDLLSGTADMAVTSFSINSARSRVIDF
TSPFYSTSLGILVRSQDTSAPIGAFMWPLHWSMWVGIFVTLHLTALFLTVYEWNSPFGMT
PHGRNRLRVFSYSSALSLCYAILFGRTVATKTPKCWTSRFLMNLWAIFCLLVLSSYTANL
AAVMVGEKTFEQVSGIHDEKLHHPSRGFRFGTVRESSAEDYMRKSFSAMHDYMRRYNQPT
TPDGVDMLKTDPPLLDAFIMDKALLDYEVSIDAECKLATVGKPFAIEGYGIGVAQGSPLT
ANVSEFISRYKSEGYMDILHEKWYKVVPCGKRVFTNTENLSMGIDHFSGLFVMLCVGVVG
AIFTLAAEHTFYHLALPRLRRSHTLTYWLHTSQKIHRALNTPYEDVGKELIGLDHNPSPC
ISDSCSLHRHQQPRNPPPLSSPLPAPPPPQPSSPARDIKENKRVHFDLESLHSYRLHTHT
ASFRGRPGMVGRHGLGGCLGGLAPPQVSLHANGGPASALASSGLALPPLGNPGSQAFLWE
GELQEVQGRIETFTAQLRDAMVRRAEIQTCLENQKMNQSTATAVKLEKEKVGQSQSLERV
RTNVEKDRTKEERDQEKERSGRNRDRTSRDSSTGRQAARQDTDRDRLIHQSQTERERNDQ
SKSLDKNGSSQSHASNILQTGRNSQSEALNTLQRRTAIQSKTSASLDRGTTNQSGAVNTL
QGERTVQSRNSTSLERGRVRQSGAVKDQERGRTVQTRTGASLDRPRASQSSAGTGNLVRE
RPAPKDTQKSLC
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
gctgtggtgtgtccaggatgggaggagaggagggagggactactgaaacatctagagaca
cagagaggaacaagctggaatctactggatatcatcaacctttcccatataggaggggag
gagagagggaaggaggagaggagggaagagagaagggaggaggaaagaggggctgagaga
agtgaagaaacaagtgatgagaccagagaagacaagagggaagctgaggtcttgtctctc
ctctcccgtcgtcttcttctctccgcctctcctctctcctccgtggtcatccttggttct
gacccagaatgtctctcttctgtcctccgctgcgcccagcgtctcgctccctcgttcccc
acgctgcagtggattatgggtaaccctctgtcacctgacaatctcctctcgctgggcggg
cccctcggcctattggcttatggagaggtgggtcgtaagccaatcaccttctacatccga
gacgcactgcggttgattggccaggcggtgacgtcggccagtgaggtgaggccagacctt
gctctgatccaaaacctggtcaactgttacgacaaacctaacaaagaggaagtgccctcg
tctggacagtacctggccaggttcctctccaacacgtcgttccagggtgctacgggcgct
gtccgcgtggcaccggctctctcccaggtcctctcctcccagctgtaccacgtgtggagc
ctgaagagaggtcctcttggccagccgtcctgggtcaccgtggcccactggaccaccggg
cgcctacagctggacgaggggagaggggatagggagagagacaacagtcctggagggaga
tggaggccggggctaaagatggagggccggaggttaagggtcgtgaccctggtggagcat
ccctttgtgttcactagagaggtggatgaggatggactgtgtcccgctggtcagctgtgt
ctggaccctaggactaaccgctcagatcgattggactcgctgttcagtcagctacaccag
accaatccaacagaggacctgcggaagtgttgctatggttacgttattgacctgttggag
aagctggcagaggacctgaagttcacctttgacctttacatcgtgggagacgggaagtat
ggagcgttgagcagcactggcaggtggactggcctggtgggagacctgctgagtggaaca
gcagacatggctgtgacatcattctccatcaactcagccaggagcagagttatagacttc
acctctcctttctactctacctctctggggatactggtgcgtagccaggacacatcagcc
cctattggggccttcatgtggcctctccattggtccatgtgggtgggcatcttcgtcact
ctccatcttaccgcactcttcctcaccgtctatgagtggaacagtccctttggtatgact
cctcatggcaggaacagactcagagtgttctcctactcctcagccctcagcctctgttac
gccatcctgtttggacgcactgtcgctactaagactcctaagtgttggaccagtaggttc
ctgatgaacctgtgggctatcttctgtctgctggtgttgtccagttatacagctaacctg
gctgctgtcatggtgggggagaaaacctttgaacaggtgtctgggattcatgacgagaag
ctccaccacccgtcccgtgggttcaggtttgggacagtcagagagagctctgcagaggac
tacatgaggaagagtttctctgccatgcatgactacatgagacgttacaaccaacccacc
acaccagacggagtggatatgttaaagacagatcctcccctactagatgcattcatcatg
gataaagctctattggactacgaagtctccatcgatgctgagtgtaaactagcgactgtg
ggcaagcctttcgctatagaggggtatggtataggtgttgcccaaggctctcctctcact
gccaacgtgtctgaattcatcagccgctacaagtcagaagggtacatggacatattacat
gagaaatggtacaaggtggtgccatgtgggaagagagtattcactaacactgagaattta
tcgatggggatagatcatttctcaggcctgtttgtgatgttgtgtgtgggggtggttgga
gccatctttaccttggcagctgaacacaccttctatcacctagccctgccccggctacga
cggtcacacacactaacctactggttgcataccagccagaagatccatcgagccctgaac
accccctacgaggacgttgggaaagagttgattggcctggaccacaatccctccccttgt
atctctgacagctgcagcctccacagacaccagcagcctcgcaatcctcctcccctctct
tcccccctccctgccccccctcctcctcagccctcctcccctgcccgggacatcaaggag
aacaagagggtccactttgatctggagagcctgcacagctaccgtctacacacacacacc
gcctccttccgggggcggcctggcatggtggggcgacacggcctgggagggtgtctgggt
ggtttagctcctcctcaggttagcctgcatgctaacggtggcccagcatcggccctggcc
tcctccggcctggccctgcctcccctggggaacccaggcagccaggccttcctgtgggag
ggagaactccaggaggtccaggggaggattgagacgttcacagcccagctgagagacgcc
atggtcaggagggccgagatacagacctgcctggagaaccagaaaatgaaccagagcaca
gctactgctgtcaaactggagaaagagaaggttggccagtcacaaagcctggagagagtg
agaaccaacgtagagaaagatagaaccaaggaggaaagagaccaggagaaagaaaggagt
ggcagaaacagagacaggacaagcagggacagttccactgggagacaagcagccagacag
gacacagacagggacagactgatacaccaatcacaaactgagagagaaagaaacgaccaa
tcaaaaagcctggacaaaaatgggagcagccaatcacatgcctccaacattctgcagaca
gggaggaacagccaatcagaagctctgaacaccctacagaggaggacagcgatccaatca
aaaacctccgccagcctggacagagggacaaccaaccaatcaggtgctgtcaatacactg
cagggagaaagaactgttcagtcacgtaactccaccagcctggagagaggaagagtcagg
caatcaggtgcagtgaaggaccaggagagggggagaactgtccaaacacggacaggggct
agtctggacagaccgagagctagccaatccagtgccggcactggaaatctggttagagaa
cgtcccgcccccaaggacacccagaagagtttgtgttag
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