Coregonus clupeaformis (lake whitefish): 121533696
Help
Entry
121533696 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121533696
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cclu04090
]
121533696
04091 Lectins [BR:
cclu04091
]
121533696
CD molecules [BR:
cclu04090
]
Proteins
121533696
Lectins [BR:
cclu04091
]
I-type lectins (Siglecs)
121533696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
C1-set
V-set
ICAM1_3_5_D2
ICAM_N
Pedibin
Motif
Other DBs
NCBI-GeneID:
121533696
NCBI-ProteinID:
XP_041695784
LinkDB
All DBs
Position
20:complement(16646977..16657436)
Genome browser
AA seq
741 aa
AA seq
DB search
MYLTLVWVLILPVTAFAFHMELNPKSALLKVGDKHKLRCSVKDCNEKVTISWALLEDKPM
FVKIVNSGSESVAIFDPVMTVHDDTLLCKGSCGALTKQHRAVVKVYSFPQYPVILGIDRL
LLGQTNTLTCKVIGAYPVEQLRLEWLRGDSLLQTDAESVVSTYTFTPTPEDKEASITCRA
THDQAGVPDDEKTKETSVSLTVLYAPQITSISELTVVRVGSSPTLLCHAEGNPRPEIQWT
AIGPHGQAVIVGQSEELVLTEMTLVDSGQYDCVASNTIGNITASVNVIVQTPPMNTSIKV
SPASKVKEGENVTVSCLSDGAPVGRMVLRRLSEDQDVALQSSNGSSTSFTLSSALLADSA
LYQCEAFNEHGSQKVSTLLSVEAYPLEVEMESGVTAEMGSNLVLSCRASGCPQPAFSWRS
MLDMPVHSHAHNQDSLSQLHLNPLGLAHEQAYTCEAKCGSVIKAKQSEVKVFSFPSDPII
ENPGPFLEDGKATLYCSVVDVYPASHLQIQWLDGETELHSEVGQYSSELQNVTSTLSFSV
EPEDQGRRITCRVGLQMDVVPQSRRERQAVTVLELHYAPRGTTITVSPASEVKEGESVTV
SCLSDGAPVGWMVLRRLSEDQDVKLQSSNGSSTSFTLSSALLADSALYQCEAFNEHGSQR
ASTNITVRAPPRNTTVLVYPSTEVQEGQNVTVCCRSVSFPPPVXGFEKTGQWHKALLLRW
ELPAGEPYAQRYRPIPGECHQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcactctggtatgggtattgatactaccagtaacagcatttgcatttcatatg
gagctaaacccaaagagtgcacttttgaaagttggtgataagcacaaactgcgatgctcg
gtgaaggattgcaatgaaaaggttactatctcctgggctttgctggaggataagccaatg
tttgttaaaatagtaaactcagggtcggaatcagtggcgatctttgaccctgtgatgaca
gtacatgatgacacacttctctgcaaaggcagttgcggagcattgaccaaacaacaccgt
gcggttgtcaaagtatactcatttccacagtaccctgtcatattaggcattgaccgactt
ctgttgggccagaccaacactctgacatgtaaggtgataggcgcttatcctgtagagcag
ctgaggcttgagtggctgcgaggagacagcttgctccagacagatgcagagtctgttgtg
tccacctacacattcacacccacccccgaggacaaagaggcaagcatcacatgcagagcc
actcacgatcaggctggtgtacctgatgatgagaagaccaaggaaacctctgtttccctc
acagtgctttatgcgccacagattacgtcaatatctgagctgactgttgtgagagttggc
tccagtcccacattgttgtgccatgctgaagggaaccccagaccagagatacagtggacg
gccattggtccgcatggacaggctgtcatagtggggcagagcgaggagcttgtccttaca
gagatgacactggtggattctggtcaatatgattgtgtggcaagcaacaccattggaaac
atcacagccagcgtgaacgtcattgttcaaactcccccaatgaacacctccatcaaagta
agcccagccagtaaggtgaaggaaggggagaatgtgacggtgtcctgcctgtcagacgga
gctccggtgggacggatggtgctgaggagactgtctgaggaccaggatgtagctctccag
tccagcaacggctcctccacctccttcaccctctcctctgccctgctagcagactctgct
ctctaccagtgtgaggcctttaatgagcacggcagccagaaagtcagcaccttgctctcc
gttgaagcgtatcccctggaggtggagatggaatcgggggtgacggctgagatgggatca
aacctggtgctctcctgccgggcttcgggctgtccccagccagccttctcctggaggagc
atgctggacatgcccgtccacagccacgcacacaaccaggactccctctcccagctccac
ctgaacccacttgggctggcccacgagcaagcctacacctgtgaggccaagtgtggctct
gtcatcaaggccaagcaatcagaggtcaaggtcttctcattcccctcggaccctatcatc
gagaaccctggaccctttctggaagacgggaaggccaccttgtattgttctgtagtcgat
gtctacccagccagtcacttgcagatccaatggctcgatggggaaactgagctacactcc
gaggtgggtcagtactccagtgagctccagaatgtgacatcaacgctatctttttcggtg
gaaccggaggatcaggggagacggatcacctgcagagtcggtcttcagatggacgtagtc
cctcagagtcggagagagaggcaggcggtgactgtactggagctccactatgcgcccagg
ggaaccaccatcacagtgagcccagccagtgaggtaaaggaaggggagagcgtgacggtg
tcctgcctgtcagacggggctccggtgggatggatggtgctgaggagactctctgaggac
caggatgtaaagctccagtccagcaacggctcctccacctccttcaccctctcctctgcc
ctgctagcagactctgctctctaccagtgtgaggcctttaatgagcacggcagccagaga
gctagcacaaacattacagtcagagcacctcctaggaatacaacagtcctggtctatcca
tccactgaggttcaggagggccaaaatgtcaccgtatgctgtcgctctgttagtttcccc
ccacctgttngtggttttgagaaaactggacaatggcacaaagctctactcctcagatgg
gaacttcctgctggtgaaccttacgcccaacgatacaggcctataccaggtgaatgtcac
caatga
DBGET
integrated database retrieval system
