Coregonus clupeaformis (lake whitefish): 121535609
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Entry
121535609 CDS
T08357
Name
(RefSeq) nectin-4 isoform X1
KO
K06593
poliovirus receptor-related 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cclu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121535609
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121535609
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121535609
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Nectin family
121535609
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
V-set
Ig_2
ig
C2-set_2
Protocadherin
RIFIN
He_PIG
TMEM154
Neur_chan_memb
Oxidored_q2
PRIMA1
EphA2_TM
Tmemb_9
DUF6377
COX2_TM
V-set_CD47
DAG1
Orf78
7TM_GPCR_Srh
DUF6249
LapA_dom
NICE-3
LST1
Miga
m04gp34like
Motif
Other DBs
NCBI-GeneID:
121535609
NCBI-ProteinID:
XP_041698769
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Position
21:50862881..50875871
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AA seq
598 aa
AA seq
DB search
MELPVWGQSQWGTAWLVLWAFAACVRGGFVEPPPSFSLRSLTEAETRLPCQFQVQEEEQV
VQVSWFKEIPDGTKEQIITAHLTEGHTEFGRYSGRVRFESSSPTVNSALLIMNTEESYEG
KYTCHISTFPYGNFERQLSLTVWTLPISSLDPVVLEEGQSFRVAASCRSVARPPPRLTWD
TDLPGQTQNRSSEGGAVSTHFSLHPLRSMNGMRLDCLVWHPALEQPRRISNRLVVQFPPD
AAVTGYNGNWYMGLKGAELKCESGGNPKPQSFTWTRDGKALPDGLTVNGARLLFGRALRQ
NDTGVYECVVNNGVGTRKVEYNITVTEKSRSVQETTVDTLVMIIIVVAAGVLVIVMIIII
ILVNRYHRRKNRKLEMELSERTLKINTLSRQASSRRLNSVSTDPRGQNEDCTLLRLDSRM
KNSLMSLEDRPIYIGSESTLGGRQGTVGEGDVDYLGRPVLYQYSWHEGRESIRGAEMEGE
REERRRRVESYLKRSDMSLDSGLPSSLVPIKPQDQDGSVGPTDIPPMLSDLCGQMEGVTK
GEDWGHRQAVLEVDEADCDTSSYQFSEALSNHFHYSNGFLRPKPHSNAILLHPRGQII
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggagttacctgtctggggccagagccagtgggggacagcgtggttggtgctatgggca
tttgcagcatgtgtgaggggtgggtttgtggagcctcctccatccttctccctgcgttcc
ttgacggaggctgagacgcggctgccctgtcagttccaagttcaggaggaggagcaggta
gttcaggtcagctggttcaaggagatacctgatggcaccaaggaacaaatcatcactgcc
cacctcacagagggacacacagagtttgggcggtactctgggagagtgaggtttgagagc
agtagccccacggtgaactctgctctgctcatcatgaacactgaggaatcttatgagggg
aaatacacctgtcacatcagcacattcccctatgggaactttgagaggcagctgtcactc
actgtgtggaccctaccaatctcctctctggacccggtggttctggaggagggccagtcc
ttccgcgtggccgcctcctgccgctccgtggcccgtcctccaccccgcttgacctgggac
acggacctccctggccagacccagaaccgcagctccgagggtggggccgtgtccacccac
ttctccctgcaccccctgaggagtatgaacggcatgcggctggactgcctcgtctggcac
cctgctctggagcaaccccggaggatcagcaaccgcctggtagtgcaatttcccccagat
gcagctgtcactggctataatggaaactggtacatgggactgaagggagctgaactcaag
tgtgagagtggaggaaaccccaaaccacagagcttcacctggaccagggatggtaaggcc
ctgccagacggcctcactgtgaatggagcaaggcttctgtttggccgagccctgagacag
aatgacactggagtttatgaatgtgtggtgaacaacggcgttgggacaaggaaagtagaa
tataacatcacagtgacagagaaatctcgcagtgtgcaggaaaccaccgttgacactcta
gtgatgatcattatagttgtggctgctggggttttggtcattgtcatgatcatcatcatc
atcttagtcaaccgataccacaggcgcaaaaacagaaaattagagatggagcttagcgaa
agaacgttaaaaatcaacacactctccagacaggcctcctcccggagactcaactctgtc
agcacagaccccagaggacagaatgaagactgtacactactcagactagacagtagaatg
aaaaacagcctaatgtcccttgaggaccgtcccatctacataggcagtgaatcaaccctt
ggtgggaggcaggggactgttggagagggggatgtggactacctaggccgccctgtcctg
taccagtatagctggcacgagggcagagagagtattaggggcgctgagatggagggagag
agggaagagcgcagacgaagggtggagtcgtacctgaagagaagcgatatgtccctggac
tctggccttccttcctctcttgtccccatcaagccccaggaccaggatggcagtgtgggg
cccacagacatccccccaatgctcagcgacctgtgtggccagatggagggggtgaccaaa
ggggaagactggggccacagacaggccgtgctggaggttgacgaggctgactgtgacacc
agttcttaccagttctcagaggcgctctccaaccacttccactacagcaacgggttcctg
cggcccaaaccacactccaacgccatcctcctacaccccagaggacagatcatctag
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