Coregonus clupeaformis (lake whitefish): 121539805
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Entry
121539805 CDS
T08357
Name
(RefSeq) nucleoprotein TPR-like isoform X5
KO
K09291
nucleoprotein TPR
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121539805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121539805
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121539805
BRITE hierarchy
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
121539805
NCBI-ProteinID:
XP_041704414
LinkDB
All DBs
Position
26:6712199..6754940
Genome browser
AA seq
2330 aa
AA seq
DB search
MSAVLPQALDRAEITKLPKAVQNKLEKLLSDLQYEIDFLKAHHEQFRVDSEQQFFEKVQR
LEQSQEQFVTQTEQHHKLREEFTKIDEELKSLRENNKKCEINQEKVTSEQAQFSKAKDEL
ESEKRELVHTLERRSQEVDYLSEDLQRLNDKVAEVNATKMGLQLKLDELESSEVNIKYRE
KRMEQEKELLQGQTAWLNGELKAKSEELLAMSRQKGNEILELKCSLENKEDEMNRVQDQV
NSLKTSNESLQKQTEDMIIKLKEAKEQHASMEDKFRNELNANIKLSNLYKGAAADSESKS
EELSGAVEELHKLLKDAGEANKALEVKLQEMDACRDKEAAELKLSISSLEKELDNANELL
SDTKLRGAASVLSEGTITTMSPTAAAVAKIVKPGMKLTELYTAYVESQEELQLQRVENKR
VNKYLDDIVQEVEDKAPILKRQRDEHERMQKSVASLSAKLEQAVKEVHRLQKVTDEANKR
SSLLERDNQRSEVQLADMAQQVCVLLIELEEARGNHVAPNEEVSSADISSTSEVITQHLV
TFRGVEELQQQNQRLLVALRELSDAQERDETETTGTKRGELERSLEKAQAELEALREQRS
HQMQLAESIVRQRDMYRVLLAQATGVRFPQQGAAPEEFSLTSTPCCSPAATPTTATPTGI
ITMATESTEAVEAKAALRQLQEVFSSYKRERSESDKALAEQTEKLQEQVSDQRSQNAKIS
TQLEFASKRYEMLQGNVEGYRKDIASLKEKGQKMAAAAQKNEQTVHTMTEDLRVAQEKLN
MAEGRAESLRKERDMLKLVESRLTQEKETIQTQQRGQNMLLTNLKTIQATLERSETDTRQ
HLNAQIEKQEREIGQLQKRLEHEVEQRHLLGRNQDLQLMDTKRQLETQMGLLQKTRDQLC
AAQLEVNSLRLQQGSEEGCRPSLGSRSSPSIPMGLESLQGSKGVSEDLRGCLRQAETRAE
ELAEQLRTATSSMEQYRAMAQSLEESMDKEKQVMEQARSSMEERVKEAQEQHRQLDRKLV
EAEKEKQGLQEEKRKALASVEQQVAELRRSLSSVQADHQEALQRAAVAADQEQQAILDSQ
EQAKLVSEAQDKYEREMMLHAADVEALQAATAQVLQAATLRQQLEERAQRASAQLLEARV
SWEEQENILKEEMSKVVSRSEELQRQNSLLHEQIQTMSSKIAATLQHQANESPLNISLTE
QGRSQDQVLEILRFVRREKEVAESRLEVAQGESRRHRLRVEHLERELRELQESLSAERER
MQVTAKTLAQHDELMKKTETMSVLMETNKMLREEKEGMEQELQLTQAKVRKLELDVMPMH
ESNAELSEKSGMLQAEKRILEEDIKRWKARTQHLVSQQKNTDSEEYKRLHFEKEAHLKRI
QQLTEETGRLKAEVARSGGFVTSLQSQVQMLREGLGKASSERDALRRDVEAKNLDIQEKF
FTITQVRKIGRRYKTQYDELKVEHDKMVAEAASTPAQEQEAQQASVQELQGLRDSLGQAE
TRTRELEGQLDNLNKVVGEREAEVRGAEEQTSGLQTELTRLRQELQEKASQEDTLKQQMS
EKEEKTRKALVGAKQKINQLMGSKDQLQKENEELKQQKEELEVRVSALKSQYEGRLSRQE
RHGEQRDEAPEQGLSKAQEQQRTTEQRGPLKTTPAADRGSASTSEPPTANIKPTPLGAQG
QSKPPANPGNKSTPRASIRPMITPATVPTPTPTATVMPTTQVENQEAMQSSEGSLEHVTV
YGSASGSVRSTSPNVQTTNPMLAVQQTQTTAFVQPTQQQSLPHTEPANQEQPLAPVVIEA
APSSQVERPSTSTAVFGTVSATPGTSSMSKRPREEEQDTSTVTDTDTPQEDPSEPPIPKK
LRIIQRVDPEEPEAQEVVLAESSTVVAPETSQQVVVEYPVLEEADAGTASQSVPVVLLLS
QPTEVTFSYDSPEESPQHDVIVIVTDSESEDEQEDEEEEEQDYDEDDEEDEEDEEMGDEG
EESNEGSGDGNEAFEGDYREGADVTDPGTETEESLGASDSTQRPADSQTHSFEGSSSIQA
FSSEPTSSAPGMPWSPRRAPHLLPPRLNMTQELGPPARVQRPMRRQSVGRVPQLNLGMAI
SGHYCDDDDRMVPHCSDGFAEAIHSPQVAGVPRFRFGTPEDLMSQTTSSHSDLGQLASQG
GLGMYDSPLFLPGHEDESGGRSVPTTPLQVAAPVSIFAVGLPSDGTEHSSQSVPMVTTST
PGLAVAGGPSPGDERDDVFMEPEGDRVEVSLEPVASQAGEMEVPAQPSDDVSLPSTSKEP
SSSYADTSSTQPKPSRPGPSRQLQRWTENRMRRGTLPSRGVTGTGRRFAR
NT seq
6993 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagtgctgccacaagcgctggatcgcgctgagataacgaaactcccaaaagct
gttcaaaataaactggaaaagctcctctctgatctgcaatatgaaatagatttcctcaag
gcacaccatgagcaatttagagtcgatagtgaacaacagttctttgagaaagtgcagcgt
cttgagcagagtcaggaacagtttgtgacccagactgaacagcaccacaaactcagagag
gagttcaccaagatcgatgaagaactcaagagtttacgggaaaataataaaaagtgtgaa
atcaaccaagaaaaggttacatctgaacaggcccagttctctaaagccaaagatgaactg
gagtcagagaagcgggagcttgtacatacactggagaggagatcccaggaagtggactat
ctgagtgaggacctgcagcgcctcaatgacaaagtggcagaagtcaatgccacaaaaatg
gggctgcagctcaagctggacgagctcgagtcctccgaggtcaacatcaagtaccgtgag
aagcgtatggagcaggagaaggagctgttgcagggccagacggcctggctgaacggagag
ctcaaggctaagagtgaggagctgctggccatgtcacgccagaagggcaacgagatcctg
gagctcaagtgcagccttgagaacaaagaggatgagatgaacagagtccaggaccaagtg
aacagtttaaagacttcaaatgaaagccttcagaagcagactgaagacatgatcatcaaa
ctgaaagaggctaaggagcagcacgctagcatggaggacaagtttaggaatgagctgaat
gccaacataaagctctccaacttgtacaagggagctgctgcagactctgagtccaagagt
gaggagttgagtggggctgtagaggagctgcacaagctgctgaaggatgctggagaagcg
aacaaggccctggaggtgaaactgcaggagatggatgcctgtcgggacaaggaggctgct
gagctgaagttgagtatctccagtctggagaaagaactggacaacgctaatgaactgctg
tccgacaccaagctcagaggtgcagcctcagtgctgtcagagggaacgattaccaccatg
tccccgactgcagccgccgtggccaagattgtcaaacctggcatgaagctgactgagttg
tatacggcctatgtggagagccaggaggagctgcagctgcagcgtgtggagaacaagcgg
gtgaataagtacctggatgacatagtgcaggaggtggaggacaaggctcccatcctcaaa
cgccagagggacgaacatgagcgcatgcagaaatctgtagccagcctgtcggccaagctg
gaacaggcggttaaggaggtgcaccgtctgcagaaggtgactgacgaggccaacaagcgc
tcttctctcctggagagagacaaccagaggtctgaggtgcagctggcagacatggcgcag
caggtctgtgtcctactcattgagctggaggaggcgcgtggcaaccacgttgcccccaac
gaggaggtgagctctgctgacatcagcagcacgtcggaggtcatcacacagcacctggtg
acgttccgtggcgtggaggagctccagcagcagaaccagcgcctcctggtggccctccga
gagctcagcgacgcacaggagagagatgagaccgagaccacaggcaccaagcgcggtgag
ctggagcggagtctggagaaggcccaggcagagctggaggctctgagggagcagcggagc
caccagatgcagctggctgagtctattgtcaggcagagagacatgtaccgtgtgctgctg
gcccaggccaccggagtccgcttccctcagcaaggtgcagcgcctgaggaattctccctg
acctccaccccctgctgctctccagctgccacccccaccacagccacgcccactggaatc
attactatggcaacagagtcaaccgaggcggtggaggccaaggcagccctccggcagttg
caggaggtgttctcctcctataagagggagaggtctgagagtgacaaggccctggcggaa
cagactgagaagctacaggagcaggtgtctgaccagagatcacagaatgccaagatatcc
acccaactggagtttgcttccaagaggtatgagatgctgcagggtaatgtggagggctac
aggaaggacattgcctctttgaaggagaagggacagaagatggctgctgcagcccagaag
aatgagcagactgttcacaccatgaccgaggacctgagagttgcacaggagaaactcaac
atggcagagggtcgtgctgagagcctcaggaaggagagggatatgctgaagctagtggag
tccagactgacccaggagaaagagaccatccagacccaacaacgaggacagaacatgctg
ctcaccaacctcaagaccatacaggccacattggagcgctcagagacagacaccaggcag
cacctgaacgcccagatagagaagcaggaaagagagatcggccagctgcagaagagactg
gagcacgaggtggagcaacgccatctgctgggcagaaaccaagatttgcagctgatggat
accaagaggcagctagagactcagatgggcctgctccagaagaccagggatcagctgtgt
gctgcccagctggaggtgaactctctcaggctgcagcagggcagtgaagaaggctgtcgt
ccgtccctgggctcccgaagctccccgtccattcccatgggcctcgaaagcctccagggt
tcaaaaggggtctctgaggatctgcgtggctgcctgaggcaggccgagacgcgggcagag
gagctggcagagcagctgaggacagccacctccagcatggagcagtacagagccatggcc
cagagcctagaggagtccatggataaggagaagcaggtgatggagcaggctcggtcctcc
atggaggaacgtgtaaaggaggctcaggagcagcaccgtcagctggataggaagctcgtg
gaggcagagaaggagaagcagggcctgcaggaggagaagaggaaagccctggcctccgtg
gagcagcaggtggctgagctgaggaggagtctgagcagtgtgcaggcggaccaccaggag
gcgctacagagggcagcagtggcagcagaccaggaacagcaggccatactggacagccag
gagcaggccaagctggtgtcggaggcgcaggataagtacgagcgcgagatgatgctccac
gctgcagacgtggaggccctccaggcagcgacggcccaggtcctgcaggcagccacgctc
agacagcagctggaggagagggcccagagagcctctgctcagctgctggaggccagagtc
tcctgggaggaacaggagaatatcctcaaggaggagatgtctaaggtggtgtctcgctct
gaggagctgcagaggcagaacagcctcctccatgaacagattcagaccatgagcagcaag
atagccgccaccctgcagcaccaggccaacgagagccctctgaacatctccctcactgag
cagggcaggtctcaggaccaggtcctcgagatactcaggtttgtgcgccgggagaaggag
gtagcggagtcacggttggaggtggcccagggagaaagtcgtcgccacaggctgagagtg
gagcacctggagagagagctgagagaactacaggagagccttagtgctgagagagaaagg
atgcaagtgacagcgaagaccctggctcagcacgatgagctgatgaagaagactgagacc
atgagtgtcctgatggagaccaacaagatgctgagggaggagaaggaggggatggagcag
gagctgcagctgacacaggctaaagtgcgtaagctggagttggacgtaatgcccatgcac
gagtccaacgctgagctgagtgagaagagcggcatgctgcaggcagagaagaggattctg
gaagaggacatcaaacgctggaaggccagaacacagcacctggtgagccagcagaagaac
acagactcagaggagtacaagcgtctccacttcgagaaagaggctcacctcaaacgcatc
cagcaactcactgaggagacaggcaggctcaaggctgaggtggccaggagtggtgggttc
gtgacgtccctgcagagccaagtgcagatgctgcgtgaaggcctggggaaggcgagctct
gagcgggatgctctcaggagggacgtagaggccaagaacctggacatccaggagaagttc
ttcaccatcactcaggtcaggaagatcggccgccgctacaagacccagtatgatgagctc
aaggttgagcacgacaagatggtggcagaggcagcatccacaccagcccaggagcaggag
gcccagcaggcctcagtgcaggagctccagggtctgagagactccctgggacaggctgag
acccggactagagaactggagggacagctggacaacctcaacaaggtggtgggtgagcgt
gaggcagaggtgcgtggggccgaggagcagacctccgggctgcagacagagctgaccagg
ttgagacaggagctgcaggagaaggcctcccaggaggacaccctcaaacagcagatgtct
gagaaggaggagaagaccaggaaagccttagtaggggccaagcagaagatcaaccagctc
atgggctccaaggaccaactgcagaaggagaacgaggagctgaagcaacagaaggaggag
ctggaggtcagggtcagtgctctgaagtctcagtacgagggccgtctgagccgccaggag
agacacggagagcagagggacgaggctcctgaacagggcctcagcaaggcccaggaacag
cagaggaccacagagcagagaggaccactgaagaccaccccagctgcagacaggggcagc
gccagtacctcagagccccccactgccaacatcaagcccacccctctgggggcccagggc
cagagcaagccccctgccaaccccgggaacaagtccaccccccgggccagcatccggccc
atgatcacccccgccaccgtgcccacccccactcctactgctaccgtcatgcccaccaca
caggtggaaaaccaggaagccatgcagtcttctgagggctcgctggagcatgtgaccgtg
tatggcagtgccagcggttcagtacggtcaaccagccccaacgttcagaccaccaaccca
atgctggcggtccagcagacccagaccacagccttcgtccaaccaacacagcaacagagc
ctgccccacactgaaccagccaatcaggagcagcccctggccccagtcgtcattgaagct
gcacccagctcgcaagtggagaggccatcgacgtccacagctgtgtttgggacagtttca
gccaccccagggacatcctctatgtccaagagacctcgtgaggaggagcaggacacctct
acggtgactgacacagacaccccccaggaggacccctctgaaccccccatccccaagaag
ctacgcatcatccagagggtcgacccagaggagccagaggcccaggaggtggtgctggct
gagagcagtacagtggtggccccagagaccagccagcaggtggtggtggagtacccagta
ctagaggaggctgatgcggggacagcgtctcagtctgtccccgtagtgctactcctgtcc
cagcccacagaggtcacattctcatacgactcccccgaagaatcccctcagcacgacgtc
atcgtcatagtgactgactcggagagcgaggatgaacaggaggatgaggaggaagaggaa
caggactatgatgaagatgacgaggaagatgaggaggatgaagagatgggagatgaggga
gaggagagcaacgaaggtagcggagatggcaatgaggcattcgaaggcgactacagagaa
ggtgctgatgtgacagacccaggcacggagacggaggagagtctaggagcatcggactcc
actcagcgcccggccgactcccagacacacagcttcgagggcagcagcagtattcaagcc
ttctccagtgaaccaaccagctctgctcccggaatgccctggtcaccacggagggcaccc
cacctgctgcccccccggctcaacatgacccaggaactgggcccccccgctcgggtacag
cgccccatgcgtcgccagtctgtaggccgagtccctcagctcaaccttgggatggccatc
agcggacactactgtgacgatgacgacaggatggtgccacactgctctgacggctttgca
gaagctatccattctccccaggtggctggtgttcctcggttcaggttcggcaccccagag
gacctgatgtcccagaccacctcctcccactctgacctgggacagctggcatcacaagga
ggtctggggatgtatgatagtcctctgttcctgccaggtcatgaggatgagtctgggggt
cgcagtgttcccaccacacccctgcaggtggctgccccagtgtccatattcgcagtgggc
ctgccctctgacggcactgaacactcctcccagtctgttcccatggtaaccacctctacc
ccgggcctggcggtggccggaggacccagtcctggggacgagagggatgatgtcttcatg
gagcctgagggagaccgtgtggaggtgtctctggagcctgtggcgtctcaggcaggggag
atggaggtacctgcccagccctcagatgacgtaagcctgccttctaccagtaaggaaccc
tcctccagctatgcagacactagtagcactcagcccaaaccctctagaccaggacccagc
cgacagctccaacgctggacagagaaccgtatgaggagaggtacattgccatcacggggt
gtaactgggactgggaggagattcgccagataa
DBGET
integrated database retrieval system
