Coregonus clupeaformis (lake whitefish): 121541717
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Entry
121541717 CDS
T08357
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04020
Calcium signaling pathway
cclu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121541717
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121541717
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121541717
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Glutamate (ionotropic)
121541717
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GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
121541717
NCBI-ProteinID:
XP_045064053
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All DBs
Position
27:complement(29052274..29081990)
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AA seq
972 aa
AA seq
DB search
MRLFLLAVVLSCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQIYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPRGFQMSTRLKIVT
IHQEPFVYVKPTEQDGTCKEEKTLNGVADIKKVICTGPNETIPGNTTGRPIVPQCCYGFC
IDLLIKLAGTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTI
NNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYL
LDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGF
AMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVEL
STMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG
IGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFML
VAGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKEASGSQAVGASMT
PSLPSSSLETQDDRKSGRAEPPDPKKKATFRSISTSLASSIKRRRSSKDTQYPPTDITGQ
LNLSDPSVSTVV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgctggcggtggtcctctcgtgctcctgtgcgcgggctggctgcgag
ccgaagatagtgaacatcggagccgtactgagccagaagaggtacgagcaagtctttaag
gatgcggtgacccaggcgaaccagatatatgggagagataaattcaagttgaccgccatc
tccgtaacgcacaaacccaacgctatccagatggctctctccgtctgcgaggacctcatc
tctaaccaggtgtatgccatcctggtgagtcatcctccccagtccaacgaccacctcacc
cccacgcctgtgtcctacaccgcaggcttctaccgcatccctgttgtgggcctcaccaca
cgcatgtccatctactccgacaagagtatccacttgtcctttctgcggactgtccccccg
tactcccaccaggctcacgtgtggtttgacatgatgcgagagtttcgatggaaccacatc
atcctgatcgtcagcgatgaccacgaggggcgggccgcgcagaagagactggagacccta
ctggaggagagggaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgcgctgcttctggaggccaaagagctggaggctcgcgtcatcatcctctccgcc
agtgaagaggacgctgctgcagtttacaaggctgcccgtttcctcaacatgacgggctcg
ggttacgtgtggctggtgggagagcgggagatgtcgggtaaagccctgagcgaggcgcca
gacggtctcattggcctccagctcatcaacggcaaaaacgagtctgcccacatcaacgac
gcagtggccgtggtggcccagtccatccaggagctctttgagaaggagaacattacagag
ccgcccagaggctgcgtgggaaacaccaacatctggaagaccgggcccctcttcaaaagg
gttctgatgtcatcaaagtacccagagggcctcactggacgtgtggagttcaatgacgat
ggcgacaggaagtacgctcactacagcattctcaactaccagaagagtcgactcattcaa
gttgggatttacaatggaacacaggtggtgatgaataatcagaggaagatcatctggccg
ggaggagagacagagaaaccgcggggctttcagatgtccacaagactaaagatagtgacc
atacaccaggagccctttgtgtatgtgaaacccactgagcaggatggaacctgcaaggag
gaaaaaaccttaaatggagtggcagatattaaaaaggtgatctgcacaggaccaaatgag
accatcccaggtaacacaacaggacgtccaattgtacctcaatgttgttatggattctgt
attgacctacttatcaagttggctggaaccatgaactttacctatgaggtgcacctggtg
gctgatgggaaatttggaacacaagagcgggtgaacaacagcaacaagaaagagtggaat
ggcatgatgggagagctcctggggggtctggcagatatgatcgttgccccgctgactata
aacaacgaacgagcccagtacatcgaattctccaaaccttttaagtaccaaggcttaacc
atcctcgttaaaaaggaaatccctcgcagtacactggactcgttcatgcagccgtttcag
agcacactgtggctgttggtcggtctttcggtgcatgtggtggcggtgatgctttaccta
ctagaccggttcagcccatttgggaggtttaaagtaaatagtgaagaagaagaagaagat
gccctcaccttgtcgtcagccatgtggttctcctggggagtgttgcttaactccggtatt
ggagaaggcgcgccgcgcagcttctcagcgagaatcttgggcatggtgtgggctggcttt
gccatgatcatagtggcatcgtatactgccaacctggctgccttcctggtgctggaccgg
cctgaggagcgcatcaccggcatcaacgacccgaggctgaggaacccatcggacaagttc
atctacgccacagtgaagcagagctctgtggacatctacttccggcggcaggtggagctt
agcaccatgtaccgccacatggagaagcacaactacgagagtgccgctgaggctatccag
gccgtgcgcgacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaa
gcctcgcagaagtgcgacctggtgaccacgggagagctgtttttccgttcgggctttggc
ataggcatgcgcaaggacagcccctggaaacagaatgtgtccctggccattctcagttcc
catgagaatggcttcatggaagatctagataaaacctgggtgagataccaggagtgtgac
tcacggagcaatgccccagccacactcacctttgagaacatggcaggagtgttcatgctg
gtggctggaggcatagcagcaggaatcttcctcatctttattgagatcgcctacaagcga
cacaaagacgcccgcaggaagcagatgcagctggcctttgcggccgtcaacgtctggagg
aagaacctgcaggacagcaaggaggcctctggaagccaagctgtgggcgcatcgatgacc
ccatcgttaccctcttcctctctagagactcaggatgataggaaaagtggtagagcagag
ccccccgaccccaaaaagaaagccacttttaggtccatcagtacctccctggcctccagc
atcaagagacgtaggtcgtccaaagacacgcagtacccacccaccgacatcacgggccag
ctcaacctgtccgacccgtctgtcagcacggtggtgtga
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