Coregonus clupeaformis (lake whitefish): 121557545
Help
Entry
121557545 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2A-like
KO
K05209
glutamate receptor ionotropic, NMDA 2A
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04020
Calcium signaling pathway
cclu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121557545
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121557545
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121557545
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Glutamate (ionotropic)
121557545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
121557545
NCBI-ProteinID:
XP_045072882
LinkDB
All DBs
Position
6:51446350..51518754
Genome browser
AA seq
1181 aa
AA seq
DB search
LYRYMKNVTWEGRDLSFTADGYQENPKLVVIVLNKDREWEKMGRLDNRSLTLKYXTVARF
NSFGDAETDDNHLSIVTLEEKPFVIVEDVERLTGTCMRNSVPCRKHIKDNTTEAGGTYIK
KCCKGFCIDILKKIAKYVKFTYDLYLVTNGKHGKKINNVWNGMVGEVVYKKAVMAVGSLT
INEERSEVIDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWIMMFVMLLLVTAMAV
FMFEYISPLGFNRNLAQGRDPHGPSFTMGKAVWLLWGLVFNNSVPVQNPKGTTSKFIVSV
WAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDNKFQNPYAYSPPFRFGTVPNGSTERN
IRKNYPNMHEYLSKYHQTGVQDALVSLKTGKLDAFIYDAAVLNYAAGRDEGCKLVTIGSG
YIFATTGYGIALHKGSYWKRQVDLAILAIIGDGEMEELEAQWLTGICHHEKNEVMSSQLD
IDNMAGVFYMLATAMGLSLITFISEHLFYWRLRYCFTGVCTGTPGLLFSISRGIWSCIHG
VHIDMKKKSDLDFSPQANMLKLIKSAKQMTNMSNLSASRINSPKRAAEFMHSAGPMIMDM
MAEKGNFIYADNRSYAPKEVIYGDTGDLQAYLANRHKDHLNNYIFQGGQHPLTLNESNPN
SVEVAVSADSAQTNAKPRGLWKKSVDTLRQGPGVPVPDMLSPDPRVSMKTQRYLPEDAAH
SDISDCSSRGAGSYQDPENNKHPKNKDGLKKRQLPSKYPRDCSEVELSYLKTKQGSGVGG
GVGPQGQTQGQGKIYTIDSDRELNLHSDPLHYRESRGLAADDDLDYPEIYSDHNDNYRKC
QDQPIIHLNSSPLRHTDVDLLPDSAYSKHYGVNNDKSLSLSPHENNDRYKQTHCRSCLSK
FPTGSSYTPGHFTPTNTASAAAAAAAARSPYNRCEACLHTANLYDISEDQLLQDAMLTNR
NMQHRDEMFGHYWPQTDGPHVQKRNRLRLSRQHSFDNIVLEKPKEVDLGRPARSVSLKEK
ERCFLDDSPYANLFSVRQADKLSGSRSTLFTLEEGKRSRSLYPDHGSDNPFMAASLRDDT
RLVHGRSYSDIYKQLGGGGLKTSSSQRNENNLRSSVKSTASYCSRDGGRIPANDMYITEH
VMPYVANKTSAYSAAPRGMLNSAQFSNRRVYKKIPSLESDV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ctctacaggtatatgaagaatgtaacatgggaaggtagagacttgtcgtttacagcagat
ggttaccaggagaaccccaagctggtcgtcatcgttctcaataaggacagagaatgggag
aagatgggtcgcctggacaaccgtagcctgacgttgaagtacnncacggtggcacgcttc
aactctttcggcgacgcggagacggacgacaaccatctgtccatagtgactctggaggag
aaaccctttgtcatcgtagaggacgtggagagactcactggaacctgtatgaggaactct
gttccctgtaggaagcatatcaaggacaacactacagaggcgggcgggacgtacattaaa
aagtgctgtaaaggattctgcatcgacatcctgaagaagatcgctaagtatgtgaagttc
acctacgatctctacctggttaccaacggtaaacatggcaagaagatcaacaacgtgtgg
aacgggatggtgggagaggtggtctataagaaagctgtcatggccgtcggctctctgacg
atcaatgaggagcgttctgaggtcatcgatttctccgtcccgttcgtggaaaccggaatc
agcgtcatggtttcccgtagcaatggaactgtctccccgtccgccttcctcgagccgttc
agtgcctcggtgtggattatgatgtttgtgatgctgttgctggtcacagcgatggctgtc
ttcatgtttgaatacatcagccctctaggctttaacaggaacctggcacagggtagagac
ccccacggcccatcgttcaccatgggtaaggcagtgtggctgctgtggggtctggtgttc
aacaactctgttccggtccagaaccccaaaggcaccaccagtaagttcatagtgtcggtg
tgggccttcttcgctgtcatcttcctggcctcgtacacagccaacctggctgccttcatg
atccaggaggagtttgtggaccaggtcaccggactgtccgacaacaagttccagaacccg
tacgcgtactcccctccgttccgtttcgggacggtccccaacggttccacagagcggaac
atcaggaagaattaccctaacatgcacgagtacctgtccaaataccaccagacaggggtt
caggacgctctggtcagcctgaagacgggtaaactggatgcgttcatctatgatgctgct
gtgttgaactacgcagcgggcagagacgagggctgtaagctggtcaccatcggcagcggg
tacatctttgccaccaccggctatggcatcgctctgcataaagggtcctactggaaacgg
caggtggatctggctatactggccatcattggtgatggtgagatggaggagctggaagct
cagtggctaacgggcatttgtcaccatgagaagaacgaggttatgtccagtcagctggat
atagacaacatggccggggtgttctacatgctggctaccgcaatgggactgtctctcatc
accttcatatcggaacatctcttctactggaggttgagatactgtttcactggagtctgt
acaggaacaccaggtctactcttctctatcagcagggggatttggagttgtatccacggc
gtccacatcgacatgaaaaagaagtcggacctggactttagccctcaggccaacatgttg
aagctcatcaagtcagccaagcagatgaccaacatgtccaacctgtctgcttccaggatc
aactcccccaagcgggcggctgagttcatgcactcggcggggcccatgatcatggacatg
atggcggagaaaggtaacttcatctacgccgacaatcgaagctacgcccctaaagaggtg
atctacggcgatacaggcgacctccaggcctacctggccaaccgacacaaagaccacctg
aataactacatcttccagggcggacagcaccctctgaccctcaacgagtcaaaccccaac
tccgtggaggtggcggtgagcgcggactccgcccagaccaacgccaagcccaggggcctg
tggaagaagtcggtggacaccctgcggcagggtccgggtgtcccggtccccgacatgctg
tcccccgacccccgcgtgtccatgaagacccagcgctacctgccggaggacgccgctcac
tcggacatctccgactgctccagccgaggagccggttcgtatcaggacccggagaacaac
aagcacccgaagaacaaggacggattaaaaaaaagacagttgccatcgaaataccccagg
gactgcagcgaggtagagctgtcctacttaaagactaagcagggcagcggagtgggaggg
ggggtgggaccgcagggacagacacagggacaggggaaaatctacaccatagactcggac
agagagctcaatctccactcggaccccttacactaccgcgagagccgcggcctggccgcc
gacgacgacctggactacccagagatctactccgaccacaacgacaactacaggaagtgt
caggaccagccaatcatccacctcaactcgtccccactgcgccacacggacgttgacctg
ctcccggactcggcctactccaaacactacggcgttaataacgataagagcctgtccctg
tcgcctcacgagaacaacgaccgctacaaacagacccactgccgctcctgtctgtccaag
ttccccaccggcagcagctacaccccgggtcacttcacgcccacaaacactgcttctgcc
gccgccgccgccgccgctgcccgctcgccctacaaccgctgcgaggcatgcctccacacc
gctaacctctacgacatcagcgaagaccagctgctccaggacgccatgctgaccaaccgg
aatatgcaacaccgggacgagatgttcggccactactggcctcagacggacggcccgcac
gtccagaagaggaacaggctgcgtctgtcccgccagcactcctttgacaacatcgtgctg
gagaagcccaaagaggtggacctggggcggcccgcacgctccgtcagcctcaaggagaaa
gagcgctgcttcctggatgattccccctatgctaacctgttcagcgtccgccaggcagac
aagctgtccggctccaggtccacgctgttcaccctggaggagggcaagcggagccggtcg
ctgtaccccgatcacggttccgacaaccccttcatggcggcttcgctgagggacgacacg
cgcctcgtccacggacgtagctactccgacatttacaaacagctgggaggaggagggctc
aaaacgtcttcatcgcaacgcaacgagaacaatctgagatcctctgtcaagtccaccgct
tcctactgctcccgggacggaggccggataccagctaatgacatgtacattacagagcat
gtgatgccttatgtagccaataagacgagtgcatactcagccgccccgcgggggatgcta
aactcagcccagttcagcaatagacgggtttataagaaaatacccagtctggagtcagac
gtttaa
DBGET
integrated database retrieval system
