Coregonus clupeaformis (lake whitefish): 121584593
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Entry
121584593 CDS
T08357
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04020
Calcium signaling pathway
cclu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121584593 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121584593 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121584593 (grin1b)
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Glutamate (ionotropic)
121584593 (grin1b)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
Motif
Other DBs
NCBI-GeneID:
121584593
NCBI-ProteinID:
XP_041756494
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Position
16:complement(58362251..58406737)
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AA seq
901 aa
AA seq
DB search
MRVFLLAFFISCSCAGGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANTLYGKDKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKNKNYENLDQLSYDNKRGPKAEKVLLFSQDTNLTSMLLEAKDLEARVIILSA
SEDEAALVYKAARQLNMTGSGYVWLVGEREMSGKALSEAPDGLLGLQLINGKNESAHIND
AVGVVAQSIQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYPDGLTGRIEFNDD
GDRRFATYSILNYQKTRLVQVGIFNGTQVVMNPQRKIIWPGGETEKPRGYQMSTRLKIVT
IHQEPFVYVQPTTSDGTCQKEKTVNGLKDVQKVICTGPNGTIPGQPIVPQCCYGFCIDLL
IKLADTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNER
AQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRF
SPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMII
VASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMY
RHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMR
KDSPWKQNVSLSILSSHENGFMEELDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGG
IVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPYPTDITGQLNLSDPSVSTV
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtgtttctgcttgcgtttttcatctcctgctcttgtgcgggtggtggatgtgaa
cccaagatcgtcaatatcggagcggtcctgagccagaagaggtatgaacaggtgttcaag
gacgccgtcacccaggcaaacacgctgtatgggaaagataagttcaagatgaacgccatc
tctgtcactcataaacccaatgcaattcagatggctctctccgtctgcgaggacctcatc
tcgaaccaggtgtatgccattctggtgagccacccacctcagtcgaatgaccatctgacc
cccacacctgtgtcctacaccgcagggttctaccgtatccctgtggttgggctcaccacc
cgcatgtccatctattcagacaagagcatccacctgtctttcttgcgtaccgtgccccct
tattcccaccaagcccaggtgtggttcgacatgatgagagagttccgctggaaccacatc
attctgatagtgagcgacgaccacgagggccgcgctgcccagaagaggctggagaccctg
ttggaggagagggagaccaagaataaaaacaagaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggcagagaaagttctcctgttcagccaagacaccaac
ctgacatccatgctgctggaggccaaggacctggaggctcgcgtcatcatcctttctgcc
agcgaggacgaagctgcgttggtctacaaagctgcgcgccagctcaacatgacgggctct
ggctacgtgtggctggtcggagagagggagatgtctggtaaagctttgagtgaagcacca
gatggcttgctcggccttcagctcatcaacggcaagaacgagtcggcgcacatcaacgat
gccgtgggcgtggtggcacagtccatccaggagctctttgagaaggagaacatcacagaa
ccgccccgtggctgtgtaggcaacacaaacatctggaggactgggccgctcttcaaacga
gtgctgatgtcatccaagtacccagatggcctgacagggcgcatcgagtttaatgacgat
ggtgacaggcggtttgctacctacagcatcctcaactaccaaaagaccaggcttgtgcaa
gtgggcattttcaacggcacccaagtggtgatgaacccgcagaggaagatcatttggcca
ggaggagagacggagaagccaagaggataccagatgtctaccagactaaagatagtaacc
attcatcaggagccatttgtctatgtacaacccacaacaagtgatggaacttgccaaaaa
gaaaaaactgtaaatggactcaaagatgtccagaaagttatatgcactggccccaatgga
accatcccaggacagcctatagtaccccaatgctgctacggcttttgcattgacctcttg
attaaactagcggataccatgaacttcacctatgaggttcatctggtggctgatgggaag
tttggtacacaggagcgggtgaacaacagcaacaagaaggagtggaacggcatgatggga
gaactcctgggtggcctggcagacatgattgtggctccgctcacgatcaacaacgaacgc
gcccagtacatcgagttctcaaaaccctttaagtaccaggggcttaccatcctcgtgaaa
aaggaaataccacgcagtactctggattcgttcatgcagccctttcagagcaccctgtgg
ctgctggtgggtctatcggtccatgtggtggcggtgatgctctacctgttagaccggttc
agcccatttggaaggtttaaagtgaatagcgaagaagaagaagaggatgccctcacctta
tcctccgccatgtggttctcatggggagtccttttgaactccgggataggagaaggagca
ccccggagcttttcagcaaggatcttaggtatggtgtgggctggatttgccatgatcatt
gtggcatcctacactgccaatctggcagccttcctagtgttggaccggcctgaggagcgc
atcactggcatcaatgaccccaggctgcgaaacccatcagataagttcatctacgccaca
gtgaagcagagctcggtggacatctacttccggcgccaagtggagttgagcaccatgtac
cgccacatggagaagcacaactacgaaagtgccgctgaggccatccaagctgtgcgcgac
aacaaactgcacgcgttcatctgggactctgccgtcctggagtttgaggcgtcacagaag
tgtgacttggtgacaacgggagagctgttcttccgttccggcttcggcataggcatgcgg
aaggacagcccttggaagcaaaacgtttccctgtccattcttagctctcatgagaatggc
ttcatggaggaactagataaaacctgggtgagataccaggagtgtgactctaggagtaat
gccccagccactctcacctttgagaacatggcaggtgtgttcatgttggttgctgggggt
atcgttgctggaatcttcctcatctttattgagattgcgtacaagcgccacaaagatgcc
cgcaggaagcagatgcagctggccttcgctgcggtcaacgtgtggaggaagaacctacag
ccttatcccacggacatcacaggccaactcaacttgtcagacccctctgtcagcacggtg
gtgtga
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