Coregonus clupeaformis (lake whitefish): 121586648
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Entry
121586648 CDS
T08357
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121586648 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121586648 (polr1a)
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121586648 (polr1a)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121586648 (polr1a)
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
Nop14
Motif
Other DBs
NCBI-GeneID:
121586648
NCBI-ProteinID:
XP_041759479
LinkDB
All DBs
Position
2:complement(8909772..8934592)
Genome browser
AA seq
1703 aa
AA seq
DB search
MLFGKEVPWRRLEGMTFGMYSAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLACPRAAIHLL
LNQLKLLNVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEEYWVNVNKLKTGSDHSSP
IKHICEKKNKLVTDFWRVQMRSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAVKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFAGMEELESSPNDFYPDLFFLELM
VVPPCRYRPINRMGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELELEEVQE
ADPAQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCPGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLLNVIPGNHIPLNLTGKAKIPSKAWIKEPPRRVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKQGANRQRKQIIKESVTCGTKALQAAFNLPDTVEESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQQRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRRWKAKREHLSPR
EGAFLLFSQKKLKNAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFDSIVESYLKDIQVKQLPEGSSKDLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNTKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRLEAKRQKERIFKITFRFLSPER
YQEDKMLTPQQILHYMENRFFRLLLEAIKKRNTKLGSINAVETRKATVRDNDQDVGDSSA
RQESGEGDGEEESRIVDDVGNEGDADASDAKRRGNQEEEVDYESEEGEEGEEAEEVEDLV
EEREEQAEENSEEVPGDLGTAEPGGAGAKKRPKPKSTPTQDSMRVNTVLETSSSIEDYSY
DSQQGLWCEVTLVLPVSKVHFDLTSLVVALAQNAVVMETKGITRCLLGEVTKKDGSKELE
LKTEGINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRFAIQSNPSPLQQMTFETSYKFLKQATMLGTHDKLVSPS
ACLVVGKVVKGGTGIFDLKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcggctggagggaatgacatttggcatgtac
tctgccgaagaaataagaaagttgagtgtcaagaacattactaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttggtcac
atcgagctacccttacccgtatacaacccactcttctttgataaactgtacctgctgatc
cgaggatcatgtctgaactgccacatgctggcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgctgaacgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcctggaaggcaatgcccaagcttctggggttgagatccaggtggtg
ttggaggagtactgggttaatgtcaacaaactgaagacaggcagcgatcacagctcacca
atcaagcatatctgtgagaagaagaacaagcttgtaacagacttctggagggtccaaatg
agatccaggaaatgcccacactgcaagagtggccgatcacaagtgcgcagagagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccgtcaagggaccc
gatgaagaggatgggatggctggaaaacgtggatacctgacccccagcacggcacgggat
cacatcgccaaactatgggataaagaaggtttcttcctgaagtgcttgttcgctggaatg
gaggagttggagagctcacccaatgacttttatcctgaccttttcttcctggagcttatg
gtggtccctccatgcaggtaccggcccattaaccgtatgggagaccagatgttcactaac
ggccagactgttaacatgcaggcagtgatgaaggacagtggagtcatccagaagctccta
gcacttctagcaggagagaagctgaaggaaaaggagttggagctggaggaggtacaggaa
gcagaccccgctcagacagaccaggccttcctggcagggatccctggtgccacactcaca
gataaactctacaatacctggattcggctccagagtcacgtcaacatcgtctttgacagt
gacatggacaaactgatgacagagaagtaccctggcattcgtcagatcttagagaagaag
gacggtttgttcaggaagcacatgatgggtaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggaatacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgcggcaggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactaatctcacccagagagaggccattgccaagcagctcctcaca
ccatgccctgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggt
gacgtcctgctcctcaatcggcaaccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttgaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactaggcagg
gctgaggcctacacactcgtcagcactgaccagcagtacctcgtgcccaaggatgggaag
cctctggcgggtctgatccaggaccacatggtgtcaggcaccaggatgaccatccgtggc
tgcttcttctcccgcgaccagtacacagagctggtctaccgaggtctgaccgacaaggtc
ggcagggtcaagctgctgccccccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtccacactactgctgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagcctccacgccgtgttcca
ggctacaagcctgaaaccatgtgtgactcccaggtgatattccgtcagggagagttgctg
gtgggggtgttggacaaggcccactatggcagctcagcatacggcctggtccactgctgc
tacgagctgtatggaggagagaccagtggcaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccggggcttcactatgggtgtggaggatatcttggtgaaa
caaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccttgcaggcagcctttaacctgcctgacacagtggaggagagcgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaaccaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcatgtctgctgggtcagattgagctggagggccgacgt
cctcccctgatgccttctgggaaatctctgccctgcttccagccgtacgaaagttcgcct
cgctctggaggctttgtgtctggcaggttcctcacaggaatcaagcccccagagtttttc
ttccattgcatggctggccgggagggtctggtagacacagctgtcaagaccagtcgatcg
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgacggcagcgtggtccagtttctctatggagaggatggccttgat
gtccccaagacacagttcctccagcaaagacagttccccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggacccgcaggctgcc
accaaccatttcaaagccatcaggaggtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactcaagaatgcagagcgccaggctcta
gagaacctggccaacggcagggacactgccaccctgaagctggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcagtgtcagagacgtttgacagcatt
gtggagtcctacctaaaggacatccaagtcaagcagttacccgagggaagctcgaaggac
cttgatgcacaaagactgaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcatcggagagccctccacccagatg
accctcaacaccttccactttgccggcaggggggagatgaacgttacccttggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttgaacactaaaaaagccatcaagcgggtgaagacactgaggaagaagctcact
cgcgtgtgtctagcagaggtgttgcacaaagtggatgtcctggagacactcagattggag
gccaaacgacagaaggagcgcatcttcaagatcacctttcgctttctttccccagagcgc
taccaggaagacaagatgctgactccccaacaaatcctccactacatggagaacaggttc
ttccgcctactactggaggccattaagaagcgcaataccaagcttggctctatcaacgct
gtggaaacacgcaaggctacagttagagataatgaccaggatgtaggggactcttcagct
agacaggagagtggagaaggggatggggaggaggagagcaggattgtggacgacgtgggg
aatgagggagacgctgacgcctcggatgcgaaaaggagagggaatcaggaggaggaagtg
gattatgagagtgaggagggagaggagggagaggaggctgaggaggttgaggacctggtg
gaggaaagagaggagcaggcagaggagaactctgaagaggttcccggtgacctgggcact
gcagagcctggtggtgctggggcaaagaagaggccaaagccgaaaagcacacccacacag
gacagcatgagggtcaacactgtgctggagactagctccagcatcgaggactactcctac
gacagccagcagggtctctggtgtgaggttacgctcgtcctgcctgtcagcaaggtgcac
tttgacctgacgtcgctggtggtggccttggcccagaatgcagtggtgatggagactaag
ggcatcaccagatgtctgctcggtgaggtcactaagaaagatggctccaaggagctggag
ctcaaaactgagggcatcaacatgcacgagctgtttaaccacagtgaaattcttgacgtg
aatcggctgtactccaatgaggtccacgccatggcaaacacgtacggcattgaggtggcc
ctgagagtcattgagaaggaaatcaaagatgtcttcgctgtctacggtattgaggtggac
cccaggcacttatccttggtggcagactacatgtgttttgagggcgtgtacaaacctctc
aaccgcttcgccatccagtccaacccctctccactgcaacagatgaccttcgagacaagc
tacaagttcctgaagcaggccactatgctgggcacccatgataagttggtctctccctca
gcttgcttagtggtgggtaaggttgtaaaaggagggaccgggatctttgatctcaagcag
ccattgcaataa
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integrated database retrieval system
