Coregonus clupeaformis (lake whitefish): 123487216
Help
Entry
123487216 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03020
RNA polymerase
cclu04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123487216
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
123487216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
123487216
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123487216
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
123487216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3654
Motif
Other DBs
NCBI-GeneID:
123487216
NCBI-ProteinID:
XP_045074309
LinkDB
All DBs
Position
Unknown
AA seq
1391 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLPYGVLDHRM
GTSEKDRPCETCGKNLADCLGHYGYLDLEMPCFHVGYFKAIIGILQMICKTCSHIMLTKE
EKLQFMDVLKRPGLSYLQKRGLKKKISDKCRKRTLCLNCSTLNGLVKKCGLLKILHEKYK
TTKKVVDAVVSDFLNSFDIAIEHNKEVGLLNRAQENLSPLVVLNLFKRIPAEDIPLLLMN
PEAGKPADLILTRLLVPPLCIRPSVISDLKAGTNEDDLTMKLTEIIFLNDVSRRWHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRETXLGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANLEMLRKLVRSGPEVHPGANF
IQQRHTQMKRFLKYGNREKMAQELRFGDVVERHMIDGDIVPLQPTALSLHKLSIMAHIAK
VKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLI
AAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGVDEKIKIALPHPAILKPMTLWTGKQ
IFGLILKPSKACPVKANLRTKGKQYSGKGEDLCSNDSFVVIQNSELMCGTMDKGTLGSGS
KKNIFYILLRDWGQLEAANAMSRLARLAPTYLSNRGFSIGIGDVTPGQGLLKAKQDLLDG
GYAKCDEYIEALKTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLI
MALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFY
SGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQ
FIYGGDGLDPAAMEGKDEPLEFNRVLDNIRSVHTCSEQPALSKNELVLTAESIMKRSDFK
CCRDSFLEEIKKFIKATSEKIKKTRDKYGINDNGTTEPKVLYQLDRITPSQLEKFLETCR
DKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKN
ISTPIISAHLDVDDDADFGRLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRL
LRLEVNAETVRYSICMSKLKVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQSLKDNLPKV
VVQGIPEVSRAVIHIDEQTGKNKYKLLVEGDNLRSVMATHGVNGNRTTSNNTYEVEKTLG
IEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLA
SFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPTPPRRPLLF
DSSDFHIPLVT
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagagcagtttagagagactgatgtggccaaaaaaataagccacatctgtttt
gggatgaagtcggctgagcagatgagacagcaggctcatatccaggtggtcagtaagaac
ctgtacagccaggacaccagccatacccctctaccatacggagtactggaccatcgcatg
ggcaccagtgagaaggatcgtccatgtgagacgtgtgggaagaacctggctgactgtctg
ggacactatggatatctggacctggagatgccctgttttcatgtgggctatttcaaagcc
atcattggaatcctacagatgatctgtaagacgtgttctcacatcatgctgaccaaagag
gagaagctacagttcatggatgtgttgaagaggccaggcctaagctacctccagaaacga
ggactgaagaagaagatatccgacaaatgccgcaaaaggacattgtgtctcaattgctcc
acgttaaatggactggtgaagaagtgtggcctgctgaagatcctccacgagaaatacaag
acaaccaagaaagtggtggacgctgtagtatctgactttctcaactccttcgatatcgca
atagaacacaacaaagaagtgggcttgctcaacagggctcaggagaacctgagtcctctg
gtggtgttgaacctgttcaagaggattccagcggaggacattcccctgctcctgatgaac
cctgaggcggggaagcctgcagacctcatcctcactcgtctgctggtacctccactctgc
atccgcccctctgtcatctcagacctcaaggcaggtactaatgaggatgacctcaccatg
aagctcacagagatcatcttcctcaatgacgtatcaagaaggtggcaccgtatgtcaggg
gccaagacccagatgatcatggaggactgggacttcctccagctgcaatgtgctctctac
atcaacagtgagctctctggcatccccctcaacatggcccctaagaagtggaccagaggc
ttcgttcagagactcaagggcaaacaagggcgattccgtgaaaccnntctcgggaaaaga
gtggatttctctgggagaacggtcatctctccggaccccaacctgcggatcgatgaggtg
gcggtccctgtacacgtagccaagatcctgacctatccagagaaggtgaacaaggccaac
ttggagatgctgaggaagctggtgcgtagcggtccggaggtccaccctggagccaacttc
atccagcaacgacacacccagatgaagaggtttcttaagtacgggaaccgagagaagatg
gcccaggagctgaggtttggagacgtggtggagagacacatgatcgatggagacatcgtc
cctcttcaaccgacagccctctctctacacaaactcagcatcatggctcatatcgccaaa
gtgaaacctcacagaacgttccggttcaacgagtgtgtgtgcacgccatacaacgctgac
tttgacggggacgagatgaaccttcaccttccccagacagaggaggccaaggctgaagcc
ctggtgctgatggggaccaaagccaacttggtgacccccagaaacggagagcctctgatt
gctgctattcaagactttctgacaggagcctacctgttgaccctaaaggacacgttcttc
gacaggtctaaagcctgccagatagtcgcctctatcctggttggggtggatgagaagatc
aagatagctctcccacacccagccatactcaagccgatgactctgtggacagggaagcag
atctttggtctgattctgaagcccagtaaggcctgtccagtcaaggccaacctgaggacc
aaggggaaacagtacagcggtaaaggagaggacctctgcagcaacgactccttcgttgtg
atccagaacagtgagttgatgtgtggtaccatggataagggcacgttgggctctggctcc
aagaagaacatattctatatcctgctgagagactgggggcagctggaggcagccaacgcc
atgtctcgcctggcccgcctcgcgcctacatacctctccaaccggggtttctccatcggt
attggtgatgtgaccccaggccagggtctgctgaaggccaaacaggacctgctggacggg
ggctatgccaagtgtgacgagtacatcgaggccctgaagactggcaaactgcagcaacag
ccaggctgcactgctgaggagaccctggaggccctcatcctgaaggagctatctgttatc
agagaccatgccggcagcgcctgcctcagagaactggacaagagcaacagtcctctgatt
atggctctgtgtggctccaaaggatccttcatcaacatctcccagatgattgcctgtgtg
ggccagcaggctataagcggctctcgagtacccgacggctttgagaaccgctcgctgcca
cactttgagaagcactctaaactccctgcagctaaaggctttgtggctgacagcttttat
tcaggcctgactcccacagagttcttctttcacactatggctggtcgagagggcttggtg
gacaccgccgttaaaacagcagagaccggatacatgcagaggcgtctggtgaagtcgttg
gaggacctgtgttcccagtatgatctgacggtacggagctccactggtgacatcatccag
ttcatctacgggggggacggcctggacccggccgccatggagggcaaagatgaaccgctg
gagttcaacagagttctggacaacatccggtctgtccatacgtgttcagagcagccagcc
cttagtaagaatgagttggtcctgacagcggagtccatcatgaagaggagtgacttcaag
tgctgcagagacagcttcctcgaggagatcaaaaagttcatcaaggctacatctgagaaa
atcaagaagaccagggacaaatacggcatcaacgataatggcaccacagagcccaaagtt
ctgtatcagttggaccgcatcactcccagccagctagagaagtttctggagacctgcagg
gacaagtacatgagagctcagatggagccgggctcggcagtaggagccctctgtgcccaa
agcattggggagcctggtacccagatgaccctgaaaaccttccactttgctggggtggct
tccatgaacatcaccctgggggtcccacgcatcaaggagatcatcaacgcatccaagaac
atcagcacacctataatcagcgctcacttggatgtggacgatgatgcagactttggccga
ctggtgaaaggaaggattgaaaagacccttctgggagagatttcggagtacattgaagag
gtgtttctgccagacgactgtttcattctggtcaagctgtcactggagagaatcagactg
ctacgactagaggtgaatgcagagacggtgcgctactctatctgcatgtctaagctgaaa
gtgaagcctggagacatagctgtgcatggggaggcagtggtctgtgtctcgcccagggaa
aacaacaagagctccatgtactacgtcctccagtctctgaaggataacctgcccaaggtg
gttgtacagggtatccctgaggtctccagagctgtcattcacatcgacgagcagaccggc
aagaacaagtacaagctgctggtggagggagacaacctgcgcagcgtcatggcaacccac
ggtgtcaacggcaacaggaccacctctaacaacacctatgaggttgagaagacgcttggc
atcgaggcggctaggtccactatcatcaatgagatacagtacaccatggtgaaccacggc
atgagcatcgacaggagacacgtcatgctcctcgcagacctcatgtcctataagggtgag
atcctaggcatcaccaggtttggcctggctaagatgaaggagagcgtcttgatgctggca
tcctttgagaaaactgccgaccatctctttgatgctgcgtactttggacagaaggactca
gtctgtggtgtatctgaatgcatcatcatgggaatccccatgaacatcggcacaggactg
ttcaagctcttacacaaggctgacaaggaccccacgccacccaggagacccctgctcttc
gacagcagcgacttccacatccccttggttacatag
DBGET
integrated database retrieval system
