Clostridium cochlearium: SAMEA4530647_1106
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Entry
SAMEA4530647_1106 CDS
T06756
Symbol
rimO
Name
(GenBank) Fe-S oxidoreductase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccoh03009
]
SAMEA4530647_1106 (rimO)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SAMEA4530647_1106 (rimO)
Ribosome biogenesis [BR:
ccoh03009
]
Prokaryotic type
ribosomal protein modification factors
SAMEA4530647_1106 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
CLP1_P
SRP54
RtcR
Matrix
Motif
Other DBs
NCBI-ProteinID:
SNV76036
LinkDB
All DBs
Position
1:1096304..1097638
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AA seq
444 aa
AA seq
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MTKIKYGIVSLGCDKNRIDSEIMINEIRKENIITNNPKEADVIIVNTCGFIEDSKKESID
TILEMANYKNNNCKVLVVTGCLSQRYGEELQELLPEVDVMLGVNDYDKLNEAVKKSIEKG
EKSIYCNYSDTVINEGNRVLTTPKHYAYLRIAEGCDNFCTYCAIPKIRGKYRSRKIEDII
NEAKALSQKGVKEIIVVAQDTTRYGLDIYGKKMLPELLKKLEEIQGVEWIRLLYCYPEDI
TEELIEEFIRNKKLCKYIDIPIQHISNYVLKRMGRKGNKELITKVLKDIKRIIPDMTIRT
SLIVGFPGERQEDFIELKDFVEEFKFENLGVFKYSQEEGTAASKMEDQILDEIKETRREE
LMKIQQDIVKNVNAGKVNKVYKVIVDNFNGEYYIGRNHEMLPEIDGAIYFKCDKILNVGE
MVNVKILENLEYDLIGVVCDESCK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagataaaatatggaatagttagcttagggtgtgacaaaaacagaattgattct
gaaataatgataaatgaaataagaaaagagaacataataaccaataatcctaaagaagca
gatgttattatagtaaatacttgcggatttatagaggactctaaaaaggagtccatagat
acaatattagaaatggcaaattataaaaataataactgtaaagtattagtggttactggt
tgtctaagccaaagatatggagaagagttacaggaattacttccagaagtggatgtaatg
ctaggagtaaatgattacgataagcttaatgaggctgttaaaaaatctatagaaaaaggt
gagaagtctatttactgtaactatagtgatacagttataaatgaaggaaatagggtatta
actacaccaaagcattatgcttatttaagaatagctgaaggctgtgacaatttctgtact
tactgcgcgataccaaaaataagaggaaaatacagaagtagaaaaatagaagatataata
aacgaagctaaagctttatcccaaaagggtgtaaaagagataatagtagtagcacaggat
actacacgatatggattagacatatatggtaaaaaaatgttaccagaacttttaaagaaa
ttagaagaaatacaaggtgtagaatggataagacttttatattgttatccagaagatata
acagaggaactaatagaagaatttattagaaataaaaagctatgtaaatacattgatata
cctatacaacacataagtaattatgtgttaaaaagaatgggtagaaaaggaaataaggaa
ttaattacaaaagttttaaaagatattaaaagaataatcccagatatgactataagaact
tcgttaatagtgggttttccaggagaaagacaggaagactttatagaacttaaggatttt
gtagaagaatttaaatttgaaaatttaggtgtttttaaatactctcaagaagaaggaact
gcagcgtcaaaaatggaagatcaaatcttagatgaaataaaagaaacaagaagagaagaa
ttgatgaaaatacaacaagatatagttaaaaacgttaatgcaggtaaagttaataaagta
tataaagtcatagtagataattttaatggagaatattatattggaagaaatcatgaaatg
ttaccggaaatagatggtgcaatttattttaaatgtgataaaatattaaatgtaggtgaa
atggtaaatgtaaagatattggaaaacctagaatatgatctaataggagttgtatgtgat
gaatcttgcaaataa
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