Chondrus crispus (carragheen): CHC_T00002363001
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Entry
CHC_T00002363001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CHC_T00002363001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00002363001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CHC_T00002363001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
CHC_T00002363001
FA (Fanconi anemia) pathway
Downstream FA components
CHC_T00002363001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
17321080
NCBI-ProteinID:
XP_005713370
UniProt:
R7Q4V3
LinkDB
All DBs
AA seq
939 aa
AA seq
DB search
MASSERTLHIAGVRVRFPHVPYRAQSALMHAVVTAVRTREHALVESPTGTGKTLALLCAA
LAVQRHTREASEDRAENAREETGAAPQGRAEAEEVAPPVREEGGEEGGEEGEDEKEEEGE
SSDSDFAKPTKFRDVSWQRGLAGRGRKRMEADHEEERPANAFMFARLLAMEQDRPLDDGC
TQGPVTQPESQDPSQPEGKKVPRIFYATRTHKQVANVISELRKTPYRPRITVLASRREYC
IREDVRSAVARDETCKALVKAGDCRHYYSAAELAAHEELKGEAWDIEELTELGRKHGGCP
YYASHELYQKAEIVFCPYSFLVDPIVRGARGINLAGDVVILDEAHNIENYARESAGFEAD
IADVRRAHDEVDIMILTGCFSGARGDLGVAYRRLKGPLEALMAIVDDAVASNELKSVERE
EMAVYEREELLGKLSLAKVDEEQIKRWRAMYEFIVNYGDGNEAKRMKKMGDVPCDSQATV
ESAGAETVQRKGAENNQDKSKTATSPTGMADNDSMKNPQMTGPGKPVPESRPAGFGYGCD
PNVEANELHIETPRQDSTRQMKRGKVGNKVRRRGRKRRGADVAEQRPWIAKCMSMTHSLL
TTLEYLFAYPNDFALVVDRRTVDYITTMRVQVCCLNAAVCFRDISNKARAVIVTSGTLSP
IDSFAGELGTRFTISKSLPHVIDVRKQLFVSVVAEGPGRERFDATYAGSSKFSFQDSLGE
ALYDYCRVIPSGVLVFFPSYRLMAQLHTRWKGSGAWDKLYTVKNTVLVEPHRRGEDFDEI
VGRYQAASESDGGAILFGVCRGKLSEGVDFRDATSRGVILVGIPFPYFGDVVVSRKRQWN
DRTRKNKTESKLQSGTEWYEMQAYRALNQALGRAVRHRYDYGAVLLLDCRFRQKHVLKQL
PKWTQAGIQQTDGSHGALLRGLQRFYDTVQEQIASSVTN
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctccgagcgcacgctgcacatcgcgggcgtgcgcgtgcgcttcccacacgtg
ccgtaccgcgcgcaatcggcgctgatgcacgccgtcgtcacggctgtgcgcacgcgcgag
cacgccctggtcgagagccccacggggacggggaagacgctcgcgctgctgtgcgccgcg
ctcgcggtgcagcgccacacgcgcgaggcgagcgaggatcgtgcggagaatgcgagggag
gagacgggcgccgcaccgcagggcagggccgaggcagaggaggtggctccgccagtgcga
gaggaggggggagaggaggggggagaggagggcgaggacgagaaagaagaggagggcgaa
tcctccgattcggactttgcgaagcccacgaagtttcgcgacgtttcgtggcagcgcggg
ctggcggggcgtggacggaagcggatggaggcggatcacgaggaggagcgaccagctaat
gcgttcatgtttgcgcggctgctcgccatggagcaagaccgtccgttggatgacggctgc
acgcaaggtccggtgacgcagccggaatcgcaagacccgagccagcccgaaggaaagaag
gtgccgcgcattttctacgcgacgcgcacgcataagcaggtcgcaaatgtcataagcgaa
ttacgcaagacgccgtaccggccgaggatcacggtgctggcgtcgaggagggagtattgt
attcgagaagatgtacgtagcgcggtggcgagggacgagacatgcaaggcgctggtgaag
gcgggggattgtcgccattattattcggcggcggagctggcagcgcatgaggagcttaaa
ggcgaagcatgggatatcgaggagctgactgagctggggaggaagcatggcgggtgtcca
tattacgcgagccatgagctgtatcagaaagccgaaatcgtcttttgtccgtatagcttc
ttggtcgacccgatcgttcgcggggccaggggaatcaatttggcgggcgatgtcgtcatc
ttggatgaggcgcacaatatcgaaaactatgcgcgggagagcgcaggttttgaagcggat
attgccgatgtgaggcgcgcgcacgatgaggtggacatcatgatcttgacgggctgcttt
tctggcgcccgcggcgatctcggagttgcatatcgcaggcttaaggggccgctcgaggct
ctcatggccattgtggacgatgcagtcgcgagcaatgagctgaaaagtgtggaaagggag
gagatggctgtgtacgaacgtgaggagcttttggggaaactgtcgttggcaaaggtggac
gaggaacagatcaagcgctggagggccatgtatgagtttattgtaaattatggagatggc
aatgaagcaaagcggatgaagaaaatgggagacgtcccgtgcgattcgcaggcaacggtg
gaatccgcgggagcggaaaccgttcagcggaaaggagcagagaacaatcaagacaagtcg
aaaactgcgacatctcctacaggaatggctgacaatgactctatgaagaacccacagatg
accggtcccgggaaacctgtcccagagtcgcgaccagctggatttgggtacgggtgtgac
ccaaatgtcgaagcgaatgaattgcatatcgagacccctcgacaggactcgacaaggcaa
atgaagcgtggcaaagtggggaacaaagttcgtcggagaggacgaaaacggcgaggagca
gacgtggcagagcagcgaccttggattgcaaagtgcatgtcgatgacccattctctgcta
acaacattggaatatttgtttgcgtacccgaacgacttcgccctcgtcgtcgaccgtcgc
accgtcgactatatcaccacaatgcgggtgcaagtatgttgtttgaatgcagccgtatgc
tttcgagacatctccaataaagctcgggcggttatcgtcacatcgggcacgttgtcgcca
atcgattcgtttgccggtgagctggggacaagatttaccatttcaaagtctctgccacat
gttattgacgtgcgcaaacagctttttgtcagcgtggtggcagagggaccggggcgagag
cgttttgatgcgacatatgccggctcgtcaaagttttcgtttcaagactcgctcggagaa
gcgctgtacgactattgccgcgtaatcccaagtggggtgctagtctttttccctagctat
cgattgatggcgcagttgcacacccggtggaagggttcgggagcatgggacaagctgtac
acggtgaaaaacaccgtcctggtcgaaccgcatcgacgaggggaagactttgacgagata
gtcggtcggtaccaagcggcgtctgagtcggacggaggagcgattctgttcggagtgtgt
cgcggaaaactgtccgagggtgtcgacttccgggacgccacgtcgcgcggtgtcatcctc
gtcggtatcccttttccgtattttggcgatgtcgtcgtgagtagaaagcggcagtggaat
gaccgcacgaggaagaacaagaccgaatccaagctacagagtgggacggagtggtatgaa
atgcaggcataccgcgcgttgaaccaggccctggggcgagcggtacgacacagatatgat
tacggggctgtcttgctgctcgactgtcggtttcgtcaaaagcacgtcctgaagcaactg
ccgaaatggactcaagccgggatccagcagactgatggaagtcacggggctttactacga
ggcctgcagcgcttttacgacaccgtccaagagcagatcgcatcatccgtcacaaactaa
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integrated database retrieval system
