KEGG   Chondrus crispus (carragheen): CHC_T00006864001
Entry
CHC_T00006864001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K03018  DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CHC_T00006864001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00006864001
Enzymes [BR:ccp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CHC_T00006864001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     CHC_T00006864001
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 17317872
NCBI-ProteinID: XP_005710179
UniProt: R7QR74
LinkDB
AA seq 1337 aa
MSSKEIASAAHIEVNNRDFYDAQDRSQTRGGTLDPRLGAINKRAVCETCQESLQECIGHF
GYIRLCLPVFHPGYFKAALNTLQMICKHCSHVMIKPSLRLKYVTKLRNPTLSSKSHIRGS
ILREVWTQSKKVSLCPYCDRANGTVKKTAVLKIVHYPADNKPPSKKKDEDDEDDVLNDDD
EDLFLAADDLNPLKVLQLFEKIPAEDVQLLDMDPEIGRPERMLVQYLPVPPLCIRPTVCA
DPSAGSTEDDLTVKAAEIVQVNSAIAQLMEKGGTTATVFDAWDQMQYEVARYINSDQPGL
PLVQGAAKPLRGICQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPQRVAK
VLTYPERVTKFNIDLLRKMVRNGTEKYPGANHIEYQDGSKKFLKYGDRKKIAKELSFGTI
VERHLIDGDIVLFNRQPSLHRISIMAHRVKISPHRTFRFNECVCAPYNADFDGDEMNLHV
PQTQEARTEALELMGVVNNIMTPKNGEPLVAATQDFITSSYLSTRKDVFMDRAEFTRVLA
TMSSAEFSLPLPQPAIQKPMELWTGKQLFTVLIQSAALSAGATKERVSMADKSFTESADA
YVCFRGGELMCGQVGKKSLGDGSKKSVLYILARECGNEAAAYAMNRLARFSARWLTDGGF
SIGVDDVSPSLALQRIKARLVNDGYEKCQEFIEQLRVGKLAPRPGCSPEETLEAVLNKEL
SNIRDVAGKACLNEIDVRTNAALTMALAGSKGSTINISQMISCVGQQTVGGGRAPDGFFG
RALPHFELGLKARSPVAKGFVSNSFFSGMKATEFFMHAQSGREGLTDTAVKTAETGYMQR
RLVKALEDLSVQYDSTVRSSSGSVIQIRYGDDDLDPIEMEDPNDGKPVNFSRLLDAMVKE
LSDDLLASKLLPSEDEENRGGLAHCIKDVQKFLIKFADKQDELESSFGLRRSQVKEFLRH
VQAKVRKATVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAS
TRISTPITTAPLVFDREMTAARIVKGRVQRTLLGEIALYIKEVYRSDDSYLAVRLDKSVI
DAFQLDVDIVEVAMRIVSHSFSKIRTSKRGLENMLRLKNKEARKKDMESRPYFLMQALKH
QLPNVPVCGIGAVSRAVISESDSVRGSYHLAIESDDIGSVMTVPGVDGVNVTCNHIMAVE
KTLGIESARQSILSQIAFTMSSHGLSVADHHLKLLADCMTSSGTVLGITRFGIQKMRTST
LMLASFEMTLDHLFDAAIHSRKDEISGVSERIIMGVPIPLGTGLFRLLRKSTPDDESVAA
QKRNILLKESMPTRVNI
NT seq 4014 nt   +upstreamnt  +downstreamnt
atgtcatcgaaagaaattgcgtctgctgcccacattgaagtcaacaacagagatttctac
gacgcgcaagaccgatcgcagacacggggtggcactttagacccgagactgggtgctatc
aataagcgagctgtttgtgaaacttgccaagaaagtctacaagaatgcatcgggcacttt
ggatacatccgcttatgcttgcctgtcttccatccaggttactttaaagcagcgttgaat
acactacagatgatttgcaagcattgctcgcatgtcatgatcaagccaagtttacgactg
aaatatgttaccaaattgcgaaacccaaccctgtcttccaaaagccatatccgtggatcc
attctccgagaagtctggacgcaatccaagaaagtctcactttgtccgtactgcgaccga
gcaaatgggactgtcaagaaaacagctgtcctgaaaattgtgcactatcctgcggacaac
aaaccaccgtcaaaaaagaaagacgaagatgatgaagatgatgtgcttaatgacgacgac
gaggacctcttccttgcggctgatgacctgaatccgttgaaagttctacagctttttgaa
aagatacctgccgaagacgttcagcttttggatatggatcctgaaattggaagacccgaa
cgaatgctagttcaatatttaccggtcccgccattgtgcatcaggccaacagtgtgcgcg
gacccctctgctggatcaactgaggacgatttaactgtgaaggccgcggaaattgtacaa
gtaaacagtgcgattgcgcagctcatggagaaagggggaaccaccgcaactgtgtttgat
gcgtgggatcagatgcagtatgaggtagctagatacatcaactccgaccaacctggtctt
ccgctggtccaaggagcagcaaaaccactgcgtggtatttgccagagactaaaaggaaaa
acaggcagattccgagggaacctgtccggaaagagggtcgatttttcgggaagaactgtt
atatctccagaccccaaccttcgtatcgaccaggttggagtcccgcaacgtgttgccaaa
gtattgacatatcccgaacgtgtaacaaagtttaacattgacctcctgagaaagatggtg
agaaatggcactgaaaaataccccggtgcaaatcacattgaatatcaagacggttctaaa
aagtttttgaagtacggagaccgcaagaagatcgcaaaagagctttcatttggtactatt
gttgaacgacatcttatcgatggtgatattgtcttgttcaatcgtcaaccaagtctacat
cgaatttctatcatggcccatcgtgtgaagataagcccgcatcgaacatttcggttcaac
gagtgcgtctgtgctccctacaatgctgattttgatggggatgaaatgaatctacacgtc
ccccagactcaagaggctcgaactgaggcattagaactaatgggtgttgtgaacaatatc
atgactcccaagaatggggaacctctagtcgcggcaacacaggatttcattacgtcgtcg
tatctttcaacgagaaaagacgtattcatggacagagcagaattcacgagggtactagcc
accatgtcaagcgctgagttttctttacctctccctcaaccagctatacaaaaaccgatg
gagttgtggactggaaagcagttattcaccgttctgatacagagtgcggccctgtcagcc
ggtgccacgaaagagcgcgttagtatggctgacaagagcttcactgagtcggctgacgca
tatgtgtgctttcgcggaggagaactcatgtgcgggcaggttgggaagaaatcgttggga
gatggctcaaagaagtctgttttatacatacttgctagagagtgtggaaacgaagctgct
gcatatgccatgaatagacttgctcgtttctctgccaggtggctcacggatggtggcttc
tcaatcggggtcgatgatgtatccccatccttggcgctacagagaattaaggccaggctc
gtgaacgatgggtacgagaaatgtcaagaatttatcgagcagcttcgggttggtaaactt
gctcctcgtccagggtgttcaccggaagaaaccctcgaagcagttctgaacaaggaattg
tcaaatattcgagacgtggcggggaaagcttgtttgaacgaaatcgatgtacgcacgaac
gccgcattgacaatggcactagccggttcaaaagggtccaccattaatatatctcagatg
atttcgtgtgtagggcagcaaactgttggcggcggccgtgctcctgacggtttctttgga
agggcattgccacatttcgaattgggtttgaaggcgcgctcaccagttgcgaaaggattt
gtatccaacagtttctttagtggcatgaaggcgactgagttcttcatgcacgctcaaagc
ggtcgagaggggttgactgatactgccgtgaagactgccgagactggttacatgcaacga
cggctggtcaaagcattggaagatctgagcgtgcaatacgattccaccgtccgttcaagt
agtggctctgtgatacaaattcggtacggagacgatgacctagatccgatagagatggaa
gatccgaacgacggaaaaccggtcaatttctcaaggcttttagacgcaatggtgaaagaa
ttatctgacgacctgttggcctcaaagctgcttcccagcgaggacgaagaaaatcgcggc
ggtcttgcccactgcatcaaagacgtacagaaatttctcatcaaatttgccgacaagcaa
gatgagctagagagcagttttggattgagacgatctcaggtcaaggaatttctacggcac
gttcaggccaaggtgcggaaagccactgtggaaccaggcactgcagtcggcgctattggt
gcccagagcatcggtgagcctggcactcaaatgactttgaagacatttcattttgcagga
gttgcctcaatgaacatcacacttggcgttccgcgtctaaaggaaatcatcaatgccagt
actcgaatttcgacaccgattacaacagcaccgctcgtatttgaccgagagatgacggct
gcgcgcattgtcaagggccgcgtgcaacgaacactgcttggagaaatcgcgttgtacatt
aaagaagtctaccgcagcgatgactcttaccttgccgtgcgcctggataagagtgttatt
gatgcgtttcagctagatgtggatatcgtggaggttgccatgagaattgtgtcgcactcg
ttttcaaaaattcgcacctctaaaagaggtcttgaaaatatgcttcgccttaaaaacaag
gaagctcgaaagaaggatatggaaagtcggccatactttcttatgcaagcattgaagcat
caattaccaaacgtcccagtttgcggtatcggcgccgtgtcgagggcagtgattagcgaa
agcgacagcgtgagaggctcttatcatctcgcgattgagtcagatgacataggaagtgtc
atgactgtgccaggggtcgatggagtgaacgtcacttgcaatcacattatggcagttgaa
aagactcttggtatcgagagtgcaaggcaatcgattctgtctcaaattgcgttcactatg
agctcacatggcctgtcggtggcggatcaccatttgaaacttcttgccgactgcatgacg
tcgagtggaactgttcttgggatcacgcgtttcggaattcagaaaatgaggacttcgaca
ttaatgcttgcgagtttcgaaatgactctagatcatttgtttgatgccgctattcacagc
agaaaggatgaaatctctggggtttcggaacgtatcatcatgggtgtacccattccactc
ggtaccggactgtttcgactgcttcggaaatcaacaccagacgatgagtctgttgctgcc
cagaaacggaacatattgctgaaagaatcaatgccgacaagagtgaatatttga

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