Chondrus crispus (carragheen): CHC_T00006864001
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Entry
CHC_T00006864001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHC_T00006864001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00006864001
Enzymes [BR:
ccp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHC_T00006864001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
CHC_T00006864001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
17317872
NCBI-ProteinID:
XP_005710179
UniProt:
R7QR74
LinkDB
All DBs
AA seq
1337 aa
AA seq
DB search
MSSKEIASAAHIEVNNRDFYDAQDRSQTRGGTLDPRLGAINKRAVCETCQESLQECIGHF
GYIRLCLPVFHPGYFKAALNTLQMICKHCSHVMIKPSLRLKYVTKLRNPTLSSKSHIRGS
ILREVWTQSKKVSLCPYCDRANGTVKKTAVLKIVHYPADNKPPSKKKDEDDEDDVLNDDD
EDLFLAADDLNPLKVLQLFEKIPAEDVQLLDMDPEIGRPERMLVQYLPVPPLCIRPTVCA
DPSAGSTEDDLTVKAAEIVQVNSAIAQLMEKGGTTATVFDAWDQMQYEVARYINSDQPGL
PLVQGAAKPLRGICQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPQRVAK
VLTYPERVTKFNIDLLRKMVRNGTEKYPGANHIEYQDGSKKFLKYGDRKKIAKELSFGTI
VERHLIDGDIVLFNRQPSLHRISIMAHRVKISPHRTFRFNECVCAPYNADFDGDEMNLHV
PQTQEARTEALELMGVVNNIMTPKNGEPLVAATQDFITSSYLSTRKDVFMDRAEFTRVLA
TMSSAEFSLPLPQPAIQKPMELWTGKQLFTVLIQSAALSAGATKERVSMADKSFTESADA
YVCFRGGELMCGQVGKKSLGDGSKKSVLYILARECGNEAAAYAMNRLARFSARWLTDGGF
SIGVDDVSPSLALQRIKARLVNDGYEKCQEFIEQLRVGKLAPRPGCSPEETLEAVLNKEL
SNIRDVAGKACLNEIDVRTNAALTMALAGSKGSTINISQMISCVGQQTVGGGRAPDGFFG
RALPHFELGLKARSPVAKGFVSNSFFSGMKATEFFMHAQSGREGLTDTAVKTAETGYMQR
RLVKALEDLSVQYDSTVRSSSGSVIQIRYGDDDLDPIEMEDPNDGKPVNFSRLLDAMVKE
LSDDLLASKLLPSEDEENRGGLAHCIKDVQKFLIKFADKQDELESSFGLRRSQVKEFLRH
VQAKVRKATVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAS
TRISTPITTAPLVFDREMTAARIVKGRVQRTLLGEIALYIKEVYRSDDSYLAVRLDKSVI
DAFQLDVDIVEVAMRIVSHSFSKIRTSKRGLENMLRLKNKEARKKDMESRPYFLMQALKH
QLPNVPVCGIGAVSRAVISESDSVRGSYHLAIESDDIGSVMTVPGVDGVNVTCNHIMAVE
KTLGIESARQSILSQIAFTMSSHGLSVADHHLKLLADCMTSSGTVLGITRFGIQKMRTST
LMLASFEMTLDHLFDAAIHSRKDEISGVSERIIMGVPIPLGTGLFRLLRKSTPDDESVAA
QKRNILLKESMPTRVNI
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaaagaaattgcgtctgctgcccacattgaagtcaacaacagagatttctac
gacgcgcaagaccgatcgcagacacggggtggcactttagacccgagactgggtgctatc
aataagcgagctgtttgtgaaacttgccaagaaagtctacaagaatgcatcgggcacttt
ggatacatccgcttatgcttgcctgtcttccatccaggttactttaaagcagcgttgaat
acactacagatgatttgcaagcattgctcgcatgtcatgatcaagccaagtttacgactg
aaatatgttaccaaattgcgaaacccaaccctgtcttccaaaagccatatccgtggatcc
attctccgagaagtctggacgcaatccaagaaagtctcactttgtccgtactgcgaccga
gcaaatgggactgtcaagaaaacagctgtcctgaaaattgtgcactatcctgcggacaac
aaaccaccgtcaaaaaagaaagacgaagatgatgaagatgatgtgcttaatgacgacgac
gaggacctcttccttgcggctgatgacctgaatccgttgaaagttctacagctttttgaa
aagatacctgccgaagacgttcagcttttggatatggatcctgaaattggaagacccgaa
cgaatgctagttcaatatttaccggtcccgccattgtgcatcaggccaacagtgtgcgcg
gacccctctgctggatcaactgaggacgatttaactgtgaaggccgcggaaattgtacaa
gtaaacagtgcgattgcgcagctcatggagaaagggggaaccaccgcaactgtgtttgat
gcgtgggatcagatgcagtatgaggtagctagatacatcaactccgaccaacctggtctt
ccgctggtccaaggagcagcaaaaccactgcgtggtatttgccagagactaaaaggaaaa
acaggcagattccgagggaacctgtccggaaagagggtcgatttttcgggaagaactgtt
atatctccagaccccaaccttcgtatcgaccaggttggagtcccgcaacgtgttgccaaa
gtattgacatatcccgaacgtgtaacaaagtttaacattgacctcctgagaaagatggtg
agaaatggcactgaaaaataccccggtgcaaatcacattgaatatcaagacggttctaaa
aagtttttgaagtacggagaccgcaagaagatcgcaaaagagctttcatttggtactatt
gttgaacgacatcttatcgatggtgatattgtcttgttcaatcgtcaaccaagtctacat
cgaatttctatcatggcccatcgtgtgaagataagcccgcatcgaacatttcggttcaac
gagtgcgtctgtgctccctacaatgctgattttgatggggatgaaatgaatctacacgtc
ccccagactcaagaggctcgaactgaggcattagaactaatgggtgttgtgaacaatatc
atgactcccaagaatggggaacctctagtcgcggcaacacaggatttcattacgtcgtcg
tatctttcaacgagaaaagacgtattcatggacagagcagaattcacgagggtactagcc
accatgtcaagcgctgagttttctttacctctccctcaaccagctatacaaaaaccgatg
gagttgtggactggaaagcagttattcaccgttctgatacagagtgcggccctgtcagcc
ggtgccacgaaagagcgcgttagtatggctgacaagagcttcactgagtcggctgacgca
tatgtgtgctttcgcggaggagaactcatgtgcgggcaggttgggaagaaatcgttggga
gatggctcaaagaagtctgttttatacatacttgctagagagtgtggaaacgaagctgct
gcatatgccatgaatagacttgctcgtttctctgccaggtggctcacggatggtggcttc
tcaatcggggtcgatgatgtatccccatccttggcgctacagagaattaaggccaggctc
gtgaacgatgggtacgagaaatgtcaagaatttatcgagcagcttcgggttggtaaactt
gctcctcgtccagggtgttcaccggaagaaaccctcgaagcagttctgaacaaggaattg
tcaaatattcgagacgtggcggggaaagcttgtttgaacgaaatcgatgtacgcacgaac
gccgcattgacaatggcactagccggttcaaaagggtccaccattaatatatctcagatg
atttcgtgtgtagggcagcaaactgttggcggcggccgtgctcctgacggtttctttgga
agggcattgccacatttcgaattgggtttgaaggcgcgctcaccagttgcgaaaggattt
gtatccaacagtttctttagtggcatgaaggcgactgagttcttcatgcacgctcaaagc
ggtcgagaggggttgactgatactgccgtgaagactgccgagactggttacatgcaacga
cggctggtcaaagcattggaagatctgagcgtgcaatacgattccaccgtccgttcaagt
agtggctctgtgatacaaattcggtacggagacgatgacctagatccgatagagatggaa
gatccgaacgacggaaaaccggtcaatttctcaaggcttttagacgcaatggtgaaagaa
ttatctgacgacctgttggcctcaaagctgcttcccagcgaggacgaagaaaatcgcggc
ggtcttgcccactgcatcaaagacgtacagaaatttctcatcaaatttgccgacaagcaa
gatgagctagagagcagttttggattgagacgatctcaggtcaaggaatttctacggcac
gttcaggccaaggtgcggaaagccactgtggaaccaggcactgcagtcggcgctattggt
gcccagagcatcggtgagcctggcactcaaatgactttgaagacatttcattttgcagga
gttgcctcaatgaacatcacacttggcgttccgcgtctaaaggaaatcatcaatgccagt
actcgaatttcgacaccgattacaacagcaccgctcgtatttgaccgagagatgacggct
gcgcgcattgtcaagggccgcgtgcaacgaacactgcttggagaaatcgcgttgtacatt
aaagaagtctaccgcagcgatgactcttaccttgccgtgcgcctggataagagtgttatt
gatgcgtttcagctagatgtggatatcgtggaggttgccatgagaattgtgtcgcactcg
ttttcaaaaattcgcacctctaaaagaggtcttgaaaatatgcttcgccttaaaaacaag
gaagctcgaaagaaggatatggaaagtcggccatactttcttatgcaagcattgaagcat
caattaccaaacgtcccagtttgcggtatcggcgccgtgtcgagggcagtgattagcgaa
agcgacagcgtgagaggctcttatcatctcgcgattgagtcagatgacataggaagtgtc
atgactgtgccaggggtcgatggagtgaacgtcacttgcaatcacattatggcagttgaa
aagactcttggtatcgagagtgcaaggcaatcgattctgtctcaaattgcgttcactatg
agctcacatggcctgtcggtggcggatcaccatttgaaacttcttgccgactgcatgacg
tcgagtggaactgttcttgggatcacgcgtttcggaattcagaaaatgaggacttcgaca
ttaatgcttgcgagtttcgaaatgactctagatcatttgtttgatgccgctattcacagc
agaaaggatgaaatctctggggtttcggaacgtatcatcatgggtgtacccattccactc
ggtaccggactgtttcgactgcttcggaaatcaacaccagacgatgagtctgttgctgcc
cagaaacggaacatattgctgaaagaatcaatgccgacaagagtgaatatttga
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integrated database retrieval system