Chrysoperla carnea: 123306033
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Entry
123306033 CDS
T09255
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03020
RNA polymerase
ccrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123306033
09124 Replication and repair
03420 Nucleotide excision repair
123306033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrn03021
]
123306033
03400 DNA repair and recombination proteins [BR:
ccrn03400
]
123306033
Enzymes [BR:
ccrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123306033
Transcription machinery [BR:
ccrn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123306033
DNA repair and recombination proteins [BR:
ccrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123306033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
123306033
NCBI-ProteinID:
XP_044743832
LinkDB
All DBs
Position
1:complement(83924991..83934561)
Genome browser
AA seq
1910 aa
AA seq
DB search
MAASDSKAPLRFVKKVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMSECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPTNPK
IKEIVMKSKGQPRKRLAFVYDLCKGKNICEGGDEMDINKEDDGRGISTAKQTHGGCGRYQ
PNIRRAGLDLTAEWKHVNEDSQEKKIPLSAERVWEILKHITDEECFILGMDPKFARPDWM
IVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLSDIIKSNNELARNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMMELVQRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQIMNILMFLPIWDGKMPQPAILKPKPLWTGKQIFSLIIPGNVNLIRTHST
HPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSLLHVCFLELGHEVCGLF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQNSIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTMPT
IKLSNRAFERRFKFDPSNERYLRRIFSEDVIKQLLGSGGDVIQELEREWEQLVKDRETLR
QIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRDLLKKCVIVAGED
HLSKQANENATLLFQCLIRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCAPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFDPTRI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDG
KFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKKRIVITDT
GEFKAIAEWLLETDGTCMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAV
LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASH
AEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIELPLGIGMGGGLGIGMGGMGG
MFFGTQATPSISPGTPWTMGTPSYASAGWSPGQGLGSGMTPGGPSFSPSAASDASGMSPA
YASPFSPGQISSPMSPYVPSGGGQSPNYSPSSPSFPPTSPSMTPTSPGYSPTSPSYSPTS
PNYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSHTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPSSPRYTPASPSYSPTSPSYSPSSPQYSPASPSYSPSSHKYSPTSPSYSPTSPSFAG
GSPQYSPTSPSYSPTSPSYSPSSPQHTPAASTRYSPSSPNYSPSSPSYSPASPQYSPTGS
SKYSPTSPTYTPTSPSYSPASPAYSPAQSPRYSPNFPSYSPTSPTHDPDN
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagtgatagcaaggctccattacgttttgttaaaaaagtgcaatttggaata
ttgagtcctgatgaaattcggcgtatgtctgttaccgatggcggtatacgttttccagaa
accatggaaggaggacgtccaaaattgggcggtctcatggatccacgacaaggagttatt
gatagaaattcacgatgccaaacgtgtgcgggaaatatgtctgaatgtcctggacatttt
ggacatatagatctatcaaaaccagtctttcatgtcggttttattaccaaaacaattaaa
atattgcgatgtgtttgtttttactgcagtaaactgttagtcagccctacaaatcctaaa
attaaagaaattgtaatgaaatccaaaggacagccacgtaaacgattggcctttgtatac
gatttatgcaaaggtaaaaatatttgtgaaggtggtgatgaaatggatattaataaagaa
gatgatggtagaggaataagtacagcgaaacaaactcacggaggttgtggtcgctatcaa
ccaaatattagacgtgctggattagatttaacagctgagtggaaacacgttaatgaagat
tcgcaagagaaaaaaatcccattaagtgcagaacgagtttgggaaattcttaaacatatt
acagacgaagaatgttttatattgggtatggatccaaaatttgctagacctgattggatg
attgtaactgtcctaccagttcctccattacctgtacgaccagctgttgttatgtatggc
agtgctaaaaatcaagacgatttaacacacaaactttcagatattataaaatcgaacaat
gaattagctcgaaatgaacaagcgggtgcagctgcacatgttatttccgaaaatattaaa
atgttacaatttcatgttgcaacacttgttgataatgacatgccaggtttgccaagagca
atgcagaaatctggtaaaccattaaaagcgattaaagcccgattaaagggaaaagaagga
cgtattcgtggtaatttgatgggtaaacgtgttgatttttcagcacgtactgtaattaca
ccggatccaaatttacgtattgatcaagtcggcgtaccacgttcaattgcacaaaattta
acattcccggaaattgtaacgccattcaatatcgataaaatgatggaattagtacagcgt
ggtaattcacaatatcctggtgctaaatatattgttcgtgataatggtgaacgtattgat
ttaaggtttcatccaaaaccatcagatttacatttacaatgtggctacaaagttgaacga
catattaaagatggtgacttagttattttcaatcgacaacctactttgcacaagatgagt
atgatgggtcacagagttaaagtactaccatggtcaacatttcgaatgaacttatcatgt
acctcaccatacaatgctgatttcgatggtgatgaaatgaatttacatgttccgcagagt
atggaaacgagagctgaagttgaaaatattcatattaccccgcgacaaattattacacca
caagctaacaaacccgtcatgggtattgtacaagatacgttaacagctgtacgaaaaatg
actaaacgtgatgtatttattgaaaaagagcaaattatgaacattttaatgttcttgcca
atttgggatggtaaaatgccacaaccggccatattaaaaccaaaaccgttatggacggga
aaacaaatcttttctttaattattcctggtaatgtcaatttaattcgtacacattccaca
catcctgatgatgaagatgatgggccatataaatggatatcaccaggagatacaaaagtt
atggtcgaacacggcgaattaataatgggaattttatgtaaaaagacacttggtgcttca
gcgggttcgttgcttcacgtttgtttcttggaacttggacatgaagtttgtggattgttt
tatggtaatattcaaacagtaattaacaactggcttttattagaaggtcacagcattggt
attggggatactattgctgatcctcaaacatatttagaaattcaaaattccatcaagaaa
gctaaagaggatgtaatagaagttatccaaaaagctcacaatatggaattggaaccgact
cctggtaatacgttgcgacagactttcgagaatcaagtaaacagaatattgaacgatgct
cgtgacaaaactggtggttctgctaaaaaatcacttactgaatacaataacttaaaggct
atggtcgttgctggttctaaaggttcaaatattaatatctctcaggttattgcttgtgtg
ggacaacaaaacgtcgaaggtaaacgaattccatttggtttccgtaaacgcacattacca
cattttatcaaagatgattacggtcctgaatctagaggattcgtcgaaaattcatatctt
gccggtttaacaccttctgaattctatttccacgctatgggaggtcgtgaaggtcttatt
gataccgctgtaaaaactgctgaaactgggtatatccaacgtcgtcttataaaggctatg
gaaagtgtaatggtaaattatgatggtacggtacgtaattcagtaggtcaacttattcag
ttacgttacggtgaagacggtttgtgcggagagatggtagaatttcaaacaatgcctact
attaaattatccaatcgtgcatttgaacgacgatttaaatttgatccatcaaacgaacga
tatttacggcgtatattttctgaagatgttattaaacaattactgggtagtggtggagat
gttatccaagaattagaacgtgaatgggaacaattagttaaagatcgtgaaactttacga
caaattttcccaagtggtgagaacaaagttgtactaccatgtaatttacagcgaatgatt
tggaatgtacagaaaatttttcatattaataaacgtgctccaactgatttgagtccgtta
cgtgtcatacaaggagttcgtgatctattgaagaagtgtgttattgtagccggtgaagat
catttatcaaaacaagccaatgagaacgctacacttttattccagtgtcttatacgatcc
acactttgtactaaatgtgtatccgaagatttccgattaagttccgaagcatttgaatgg
ttgattggagaaattgaaactcgattccaacaagcacaatgcgcaccaggtgaaatggtt
ggtgcgttagctgcacaaagtttgggtgaacctgctactcaaatgacattgaacactttc
cattttgctggtgtatcgtccaaaaacgtaacccttggtgtaccacgtctaaaagaaatt
attaatatcagtaaaaaaccaaaagctccatctctaaccgtatttttaactggcgcagct
gcacgtgatgcagaaaaagctaagaatgttttatgtcgattggaacataccacattaaga
aaagttactgcgaatacggctatttattacgatccagacccacaaaatacagtcatcact
gaagatcaagagttcgttaatgtttattatgaaatgcctgacttcgatccaacaaggata
tcaccttggttgctacgtatagaattagatcgtaaacgtatgacagataaaaaattgact
atggaacaaattgctgagaaaattaacgctggatttggtgatgacttaaattgtatattt
aacgatgacaatgctgaaaaactagtgttacgtattcgaatcatgaactctgatgacgga
aaatttggtggagaaggtggcgaagaagaagtggataaaatggaggatgatatgttcttg
cgttgtattgaagctaatatgcttagtgatatgacattgcagggaattgaagctattgcc
aaagtatacatgcatttaccacaaacagacagtaaaaaaagaattgttattaccgatact
ggtgaatttaaagcaatcgctgagtggcttttggaaactgatggtacttgtatgatgaaa
gtattatctgaacgtgatgtagatcccgtacgaacatttagtaacgatatttgtgaaatt
ttctctgtattgggtattgaagctgtacgtaaatctgtagagaaagaaatgaacgctgta
ttgcagttttatggtctttacgtaaactatcgacatcttgctttgctttgtgacgtaatg
acagctaaaggtcacttgatggctatcacacgtcacggtattaatcgacaagatactggt
gcacttatgagatgttccttcgaagaaactgtagatgtgttgatggatgctgctagtcat
gctgaagttgatcctatgcgtggtgtatctgaaaatattatcatgggtcaattaccgcga
atgggaacaggttgtttcgatttattacttgatgctgaaaaatgtaaagccggtattgag
ttacctctgggtattggaatgggaggtggattaggaattggtatgggtggaatgggtgga
atgttctttggaacacaagcaacaccaagtatatcacccggtacaccatggactatgggt
actccatcttatgcatctgccgggtggtcaccaggacaaggtcttggttctggtatgaca
ccaggtggaccaagcttttcaccaagtgctgctagtgatgcatctggtatgagtcctgcg
tatgcctcaccgttttcacctggtcaaatttccagtccaatgtcaccatatgtgccatct
ggaggtggacaatctccaaattattcaccttcaagtccatcattcccaccgacttcacca
agtatgacacctacatcgcctggctatagtccaacttcaccatcgtactctccgacttca
ccgaattattctccagcttcaccaagttattcaccaacttctccttcatattcaccaaca
tctccaagctattctccaacgtctccatcatattctcctacatcaccttcatattctcct
acatcaccatcttattcacctacttctccttcttattccccgacgtctccgtcatattca
ccgacttctccttcgtattcacctacaagtccttcatattctcctacctcaccatcttat
tcgcctacctcacctagttattcacacacgtcaccatcatattcaccaacatctcccagc
tattctccaacaagtccttcttattcaccaacgtcacccagctactctccaacttcacca
tcgtattctccatcaagcccacgctatacaccagcttcaccaagctattctccaacgtca
ccaagttattcgccatcatctccacaatattcaccagcttcaccaagctactcaccatcg
tcacataaatattcaccaacaagtcctagttattctccaacatctccatcatttgctgga
ggtagtcctcaatattcacctacatcaccgagctattctccaacatctccaagctattct
ccttcatctccacaacatacaccagcagccagtacaagatattcaccatcatctccaaat
tattccccatcaagtcccagttattctccagcctcgccacaatattcaccaacaggaagc
tcaaaatattcaccaacatccccaacatacacaccaacgtctccttcttatagtccagct
agtcctgcttatagcccagcacaatcacctagatattcacccaatttccctagctattcg
ccaacaagccctactcatgatcctgataattaa
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integrated database retrieval system
