Corvus cornix (hooded crow): 104685010
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Entry
104685010 CDS
T03546
Symbol
CACNA1H
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04010
MAPK signaling pathway
ccw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104685010 (CACNA1H)
04020 Calcium signaling pathway
104685010 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccw04040
]
104685010 (CACNA1H)
Ion channels [BR:
ccw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
104685010 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Motif
Other DBs
NCBI-GeneID:
104685010
NCBI-ProteinID:
XP_039416387
LinkDB
All DBs
Position
14:complement(7151643..7311782)
Genome browser
AA seq
2417 aa
AA seq
DB search
MSAGDSREPRPAEVRVPITAPRRPEQPPEDAGTGSGSGSGSGSGSSSGSPGREPPAELGS
EEEEQVPYPALAPTAFFCLKQTTRPRSWCLRLVCNPWFEHVSMLVILLNCVTLGMFQPCE
DVECQSERCTILEAFDDFIFAFFAVEMVIKMVALGIFGQKCYLGDTWNRLDFFIVMAGMM
EYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIF
GIVGVQLWAGLLRNRCFLDRNFAMTYNLTFLHPYYRPDEAEENPFICSSHRENGMQRCSN
IPSRKESKVECTLSMDSYSPSLASPEPSRNSCINWNQYYNVCMAGDVNPHNGAINFDNIG
YAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSET
KQRENQLMQEQRARYLSNDSTIASFSEPGSCYEELLKYICHIFRKVKRRTIRLYNNWQSK
RRKKVNPNSSSSGQSQRSRRRITSIHHLIHHHHHHHHHHYHISNGSPRGPRANPEICELE
LQVMKPGRQLMLPPPPSPRPQGPAAPRADAEAVHSIYHADCHVEGPPGGCKAPSAPAGSK
LAGLATHGSMNYPTILPSPGSKGGSTPLPKGKKNGNSPVAVVNSPGNLGLDSYGKLQQLV
GEHGLRRTPSRLSGLSTAGALPSPGGPRLSCELQDCPFCASLLDDPEFALSDSDSNGDSD
SNGVYEFTQDLRHGDHRDQLQQQRVRRRRKKKKAKERNKVTKLWRAFGTKLKRIVESKYF
NRGIMIAILINTLSMGIEYHEQPDELTNALEISNIVFTSMFALEMLLKLLAFGIFGYIKN
PYNIFDGIIVVISVWEIIGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNV
ATFCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQED
WNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSDTDEDKTS
ANFEDEFEKLKDFRATEMKMYSLAVTPNGHLEGRGAMPPPIIMRTAATPMPTPKCSPHLD
SLHAFGDSRRGSNASLEPTGYDQKSLSSLRSSPCANWGTSSNWGSRRSSWNSLGRAPSLK
KKNQSGERESLLSGEGKGSTDDDSDDAKSSTLSRPSLPRRAESLDYRGSLELPELLRVPS
VRQLGLGPAALLPAEFHDCNGKMGHGPGEFFLRVDGHKEDALDYEDDMEDSYCYRIRKAL
EPYKPRWCKTHEDWSLYLFSPQNRFRVMCQKVIAHKMFDHVVLVFIFLNCITIALERPDI
DPLSTERIFLSVSNYIFTAIFVAEMMVKVVALGFFSGENTYLQSSWNVLDGVLVFVSIID
IIVSMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICC
AFFIIFGILGVQLFKGKFYYCDGPDVKNITTKADCTNAHYKWVRRKYNFDNLGQALMSLF
VLSSKDGWVNIMYDGLDAVGIDQQPIQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENF
HKCRQHQEAEEARRREEKRLRRLEKKRRSKEMYLSEAQRRPYYADYSPARRYIHSLCTSH
YLDLFITFIIGVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEALLKLVAFGFRRFF
KDRWNQLDLAIVLLSIVGITLEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRA
LLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLDCSDENPCEGLSRHATFTNFGMA
FLTLFRVSTGDNWNGIMKDTLRECTREDKHCLSYLPVISPVYFVTFVLIAQFVLVNVVVA
VLMKHLEESNKEAKEDAEMDAEIELEMSRGTNAAGGSRGGAGAPESRALHGNQEHTKAVL
QGKHQALGSAASLRPQDSQNLLTVRKISVARMHSLPNDSYMFRPVTPAKAPFPLHEVEME
TYPCKAQRGSITSIRSQPVGTSSSLRVPTESLPLAARSPGHEGRHRWKALPPHGTPRSPA
LNKLLCRQEAVRTDSVDGQTQERKDSLQAEPGEPQPSAKQPQSTLTPSPLHSPLPATPPR
SPPSSPHRPLGPLARKHTCGQHSVPSRPPSPASPSGPEGCQGEPSDLADEEVRHINSSAK
DWAEEHSDPSSRSTSPFTSPAPSPVPLKNCSTSSLSCKEKDLKKFYSTDTKGFLSKPSWA
DEQRRHSIEICPSGGAPDCGFQDPAEDKQRPPAHVQPEADYIHGARRKKKMSPPCISIDP
PMEDDTGAAPRTKPSENTLLRRRTPSCEFPAYRESLELTESQPPCRGEHLSIPNFSFEQL
DGGSLSSLSELLDSGQSTPASMDSRPDAELKKPDHLKTQWSNGERSKELLGTAKSPLRKQ
DLGPVTVATEEGTDDPV
NT seq
7254 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccggcgacagccgcgagccgcgcccggccgaggtgcgggtgcccatcacggcg
ccgcgccgccccgagcagccgcccgaggatgccggtaccggctccggctccggctccggc
agcggctccggctcgagcagcggctcccccggccgcgagccgcccgccgagctgggctcc
gaggaggaggagcaggtgccgtacccggcgctggcacccaccgctttcttctgcctcaag
caaaccacccgcccgcgcagctggtgcctcaggctggtctgtaatccctggttcgagcac
gtgagcatgctggtgatcctgctcaactgcgtcaccctgggcatgttccagccctgcgag
gacgtggaatgccagtcggagcgctgcaccatcctggaggcgtttgacgacttcatcttc
gccttctttgccgtggaaatggtcatcaagatggtggccctgggcatcttcgggcagaag
tgttaccttggggacacctggaatcgcctggacttcttcatcgtcatggcagggatgatg
gaatattccctggatggacacaacgtgagcctctccgccatccgcaccgtccgcgtcctg
cggccactgcgggccatcaacagggtcccaagtatgaggatcctggtgaccctgctgctg
gacactctgcctatgttaggcaatgtcctcctcctgtgcttcttcgtcttcttcatcttc
gggattgtcggggtccagctctgggcggggctgctgaggaacaggtgcttcctagacagg
aattttgccatgacgtacaacctgaccttcctgcacccctactaccggccggacgaggcg
gaggagaaccccttcatctgctcctcgcaccgggagaacgggatgcagaggtgctccaac
attcccagcaggaaggagtccaaggtggagtgcaccctgagcatggattcctacagcccc
agcctggccagccccgagcccagcaggaattcctgcatcaactggaaccagtactacaac
gtctgcatggccggggacgtgaacccccacaacggggccatcaattttgataatattgga
tatgcctggattgctatttttcaggtgataaccctggaaggatgggtggacatcatgtat
tacgtgatggatgcacattctttttacaattttatatattttatactgctcatcatagtc
ggctccttcttcatgattaacctgtgtctggtggtgatagcgacccagttttcggagacc
aagcagcgggagaaccagctgatgcaggagcagcgggcgcgctacctgtccaacgacagc
accatcgccagcttctcggagccgggcagctgctacgaggagctgctcaagtacatctgc
cacatcttcaggaaggtgaagcgaaggacaatccgcctctacaacaactggcagagcaaa
cgccggaaaaaagtcaaccccaacagcagcagcagcgggcagagccagcgcagcaggagg
agaatcacctccatccaccacctgatccaccaccatcaccaccaccaccaccaccactac
cacatcagcaacgggagcccccgtgggcctcgtgccaaccccgagatctgcgagctggag
ctgcaggtgatgaagcctggcaggcagctgatgcttccccctcctccctcgcccaggccg
cagggccctgctgctccccgtgccgatgccgaggccgtgcacagcatttaccacgcggat
tgccacgtggaggggccccccgggggctgcaaggctcccagtgcccctgctggcagcaaa
ctggccgggctggccacccacggcagcatgaactaccccactatcctgccctcccctggc
agcaagggcggctccacgccccttcccaaagggaagaagaacgggaattctccggtggcc
gtggtgaacagcccagggaatttgggcctggattcttacgggaagctgcagcagctggtg
ggagagcatggtctccgccggacgcccagccggctgtcggggctgagcacagccggggcg
ctgcccagccctggtggcccccggctgagctgcgagctgcaggactgtcccttctgtgcc
agcctcctggacgaccccgagttcgccctcagcgactccgacagcaacggcgactccgac
agcaacggcgtctacgagttcacgcaggacctgcggcacggcgaccaccgggaccagctc
cagcagcagcgggtcaggaggaggaggaagaagaagaaagccaaggagaggaacaaggtg
acaaagctgtggcgggcgttcggcaccaaactcaagcggatcgtggagagcaaatacttc
aaccgcgggatcatgatcgccatcctcatcaacaccctcagcatgggcatcgagtaccac
gagcagccagacgagctgaccaacgccttggagatcagcaacatcgtcttcaccagcatg
tttgccctggagatgctcctgaaactcctggcctttggaatctttggctacatcaagaac
ccctacaacatcttcgacgggatcatcgtggtcatcagtgtctgggagatcatcgggcag
tcggacgggggcctgtccgtgctccggacgttccggctgctccgcgtgctgaagctggtg
cgcttcatgcccgccctgcgccgccagctcgtggtgctcatgaagaccatggacaacgtg
gccaccttctgcatgctgctcatgctcttcatcttcatcttcagcatccttggcatgcac
ctttttggatgcaagttcagcctgaaaaccgacacgggagacacagttccagacaggaag
aattttgattccttactctgggccatcgtgaccgtgttccagatcctcacgcaggaggac
tggaacgtggtgctctacaacgggatggcctccacctcctcgtgggccgccctctacttc
gtggccctgatgacctttggcaattacgtgctcttcaacctgctggtggccatcctggtg
gaaggattccaggcagagggagatgccaacaggtcagacacagatgaggacaagacatct
gccaacttcgaggatgagtttgagaagctgaaagacttccgagcaacagagatgaagatg
tactccctggctgtcacccccaacgggcacctggagggcaggggggccatgcccccgccc
atcatcatgcgcacggcggccaccccgatgcccaccccaaagtgctccccacacctggac
tccctgcacgccttcggggactcgaggagaggcagcaacgcctcgctggagcccacgggc
tacgaccagaagtccttgtccagccttcgcagctccccctgcgccaactggggcaccagc
agcaactggggcagccgccgctcgagctggaacagcctgggcagggccccgagcctcaag
aagaagaaccagtcgggagaacgggagtccctgctgtccggagagggaaaaggcagcacg
gacgatgactcggacgatgccaagtccagcacgctcagccggccctcgctgccccgccgg
gcggaatccctggattaccgcggctccctggagctgcccgagctgctccgggtgccctcc
gtgcgccagctcggcctggggcccgcggccctgctgcccgccgagttccacgactgcaat
ggcaagatgggccacggccccggagagttcttcctgagggtggatggccacaaggaggat
gccctggactacgaggatgacatggaggatagttattgctaccggatccgcaaagccctg
gagccctacaaaccccgctggtgcaagactcacgaggactggtccctctacttgttttcc
ccacagaacaggttccgagtgatgtgccagaaggtcattgcccacaaaatgtttgaccac
gtggtgctggtctttatcttcctcaactgcatcaccatagctctggagagaccagacatc
gaccccctgagcacggaaaggatattcctgagtgtctctaattacatcttcactgccatc
tttgtggctgaaatgatggttaaggtggtggcccttggctttttctctggggagaacacc
tacctgcagagcagctggaacgtcctggatggagtcctggtctttgtatccatcattgac
atcatcgtgtccatggcatcagcaggaggagccaaaatcctgggagtccttcgtgtgttg
aggcttctgcggaccctgagacctctgcgagtcatcagcagagccccaggtctgaagctg
gtggtggaaaccttgatctcctccttgaggcctattgggaatattgttctcatctgctgt
gctttcttcatcatctttgggattttaggggtccagctttttaaaggcaagttctactac
tgtgatggccctgatgtcaaaaacatcactacgaaggccgactgcaccaacgctcactac
aaatgggtccggaggaagtacaacttcgacaatttggggcaggccctgatgtccctgttt
gtcctctcctccaaggatggctgggtgaacatcatgtacgatgggctggacgctgtgggc
attgaccaacagcccatccagaaccacaacccttggatgctgctctacttcatctccttc
ctgctcatcgtcagcttcttcgtgctcaacatgttcgtgggggtggtggtggagaacttc
cacaagtgccggcagcaccaggaggcggaggaggcgcggcgccgggaggagaagcggctc
cgccgcctggagaaaaagcgcaggagtaaggagatgtacctgtctgaagcccagcgccgg
ccctactacgccgactactcgccggcgcggagatacatccacagcctgtgcaccagccac
tacctcgacctcttcatcaccttcatcatcggcgtcaacgtcatcaccatgtccatggag
cactacaaccagcccaagtccctggatgaagccctcaagtactgcaactacgtgttcacc
atcgtctttgtgttcgaggcgctcctgaagttggtggcctttggtttccggaggttcttt
aaggacaggtggaatcagctggacttggccatagttctcctgtcaatcgtggggatcacg
ctggaggagatcgagatgaatgctgcgcttcccatcaatcccaccataatccggatcatg
agggtgctcaggatagccagagtgctgaaactgctgaaaatggccacgggcatgagagct
ctgctggacacggtggtgcaagccctgccccaggtagggaaccttggcctactttttatg
ctcctgttttttatctatgctgccctgggagtggaattgtttggcaagctcgattgcagt
gatgagaacccctgtgaaggcctgagccgccacgccaccttcaccaacttcggcatggcc
ttcctcaccctcttcagggtgtccacgggggacaactggaatgggatcatgaaggacacg
ctccgggaatgcactcgggaggacaagcactgcctcagttacctgcccgtcatctccccc
gtctacttcgtcaccttcgtcctcatcgcccagttcgtcctggtcaacgtggtggtggca
gtgctgatgaagcacctggaggagagcaacaaggaggccaaggaagacgctgagatggat
gctgagatcgagctggagatgtccagaggaaccaatgctgctggcgggagccggggtggg
gccggggcccctgagagccgggcgctgcacgggaaccaggagcacaccaaggccgtgctg
caggggaagcaccaagccctgggcagtgcagcctccctgaggccccaggattcccagaac
ctgctgaccgtccgcaagatctccgtggcccggatgcactccctgcccaacgacagctac
atgttccggcccgtgactccggcaaaggccccgttccccctgcacgaggtggagatggag
acgtatccctgcaaagcccaaagaggatccatcacctccatccgctcccagcccgtgggg
acgagttcctcgctgagagtgcccacggagtcgctgccgctggccgcgcgctcccccggc
cacgaagggcggcaccgctggaaggcccttcccccccacggcaccccccgatctcctgct
ctcaacaagctgctctgcagacaggaggccgttcggacagactcagtggacggacagact
caggagcgcaaggacagcctgcaagcagagcctggagagccccaaccatcagcaaagcag
ccccagagcaccctcacccccagccctctccattcccccctcccggccacccctccgcgc
tcccccccgtcctccccacaccggcccctcggccccctggcacggaagcacacatgtggc
cagcacagtgttcccagccggccacccagccccgccagcccctctggccccgagggctgc
cagggcgagccctcggacctggctgacgaggaggttcggcacatcaacagctcggccaaa
gactgggcagaggagcactcggaccccagcagccgctccacctcacccttcacctcgccg
gccccgtcccccgtgcccctcaagaactgcagcacaagcagcctctcctgcaaggagaag
gacttgaagaagttctacagcaccgacaccaagggcttcctcagcaagcccagctgggcc
gatgagcagcggcgccattccatcgagatctgcccctccggcggcgccccggactgcggc
ttccaggaccccgctgaggacaagcagcggccccctgcccacgtccagccagaggccgac
tacatccacggagcccggaggaagaagaagatgagcccgccctgcatttctatagatcct
cccatggaggatgacaccggggcggccccgcgcaccaaaccctccgagaacaccctgctg
cggaggaggaccccgtcctgcgagttcccggcctaccgagaatccctggagctcacggag
agccagcccccgtgccgcggggagcacctcagcatccccaacttctccttcgagcagctg
gacggcggctccttgagcagcctctcggagctgctggacagcggccagtccacaccggcc
tccatggactcgcggccggacgcggagctgaaaaagccggatcacttaaaaactcagtgg
agcaacggcgagaggagcaaagagctgctgggcactgccaagagccccctgcggaagcag
gacttgggccccgtgactgttgccacagaagaaggcacggatgacccagtatag
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integrated database retrieval system
