Corvus cornix (hooded crow): 104690502
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Entry
104690502 CDS
T03546
Symbol
PRDM6
Name
(RefSeq) putative histone-lysine N-methyltransferase PRDM6
KO
K20795
[histone H4]-lysine20 N-methyltransferase PRDM6 [EC:
2.1.1.361
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw00310
Lysine degradation
ccw01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
104690502 (PRDM6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccw03000
]
104690502 (PRDM6)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104690502 (PRDM6)
Enzymes [BR:
ccw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.361 [histone H4]-lysine20 N-methyltransferase
104690502 (PRDM6)
Transcription factors [BR:
ccw03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
104690502 (PRDM6)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
104690502 (PRDM6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
zf-H2C2_2
SET
zf-C2H2_jaz
Zap1_zf1
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
104690502
NCBI-ProteinID:
XP_039423724
LinkDB
All DBs
Position
Z:complement(47364312..47441750)
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AA seq
573 aa
AA seq
DB search
MLKPGDPGGSAFLKVDPAYLQHWQQLFPQSSQLKSSGPLAQLQPPERAEPSADSLRQRPT
SLSSASSSSSSSTPSSSSTSSCVAAAAASLAGLTSLPVTQLPVFGPLQSSELPAGGAPAP
LQGKDLCGAGSGGGKCGDRGAARYRCTAEELDYYLYGQQRMEIIPLNQHTSDPNNRCDMC
ADNRNGECPMHGPLHSLRRLVGTSSVAAAAPPPEIPEWLRDLPREVCLCTSTVPGLAYGI
CAAQRIQQGTWIGPFQGILLLPEKVQAGAIRNTQHLWEIYDQDGTLQHFIDGGEPSKSSW
MRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQCIAQD
ENLNVPSTVMEAMSRQDTLQPFNKSSKLSPATPQRSIVFPQTPCSRNFSLLDKSGSIESG
FNQISVKNQRVLASPTSTSQLNSEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQ
CGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERC
ERSFTQATQLSRHQRMPNECKPITESTESIEVD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagcccggcgaccccggcggatccgcgttcctgaaggtggatcccgcctatctg
cagcactggcagcagcttttcccgcagagcagccagctcaaaagcagcgggcccctcgcc
cagctccagccgcccgagagagccgagccctcggctgacagcctccgccagcgcccgacc
tccctctcctccgcctcctcctcctcttcctcgtccactccgtcttcctcctccacctcc
tcgtgcgtggctgctgcggccgcttccctggctggcctgacctccctgcctgtgacccag
ctccctgtcttcggcccgctgcagagctcggagctcccggccgggggagcgcccgctccc
ctgcagggcaaggatttgtgcggggccggcagcggcggcggcaaatgcggcgaccgtggt
gccgctcggtaccgatgcacggccgaggagctggactactacctgtacgggcagcagcgc
atggagatcatccccctgaaccagcacaccagcgaccccaacaaccggtgtgacatgtgt
gctgataaccgcaacggcgagtgccccatgcatgggcccctgcactccctgcgccggctg
gtgggcaccagcagcgtggccgcggcggcccctccgcctgagatcccggagtggctccgg
gacctgccccgggaagtgtgtctgtgcaccagcacagtgcctggcctggcctatggcatt
tgcgcggcacaacggatccagcagggcacctggattgggcccttccaaggaattttgctc
ttgccagagaaggttcaagcaggtgccatcaggaacactcagcatctctgggaaatatat
gaccaagatgggacactgcagcactttatcgatggtggagaacccagtaagtcaagctgg
atgaggtacatccgatgtgcaaggcactgtggggagcagaacttaacagtggttcagtac
aggtcaaatatattctaccgggcttgtatagatatccccaggggcactgagctgttggtg
tggtacaatgacagctacacatctttctttggaatccctctccagtgcattgcacaagat
gagaatttgaatgtcccttcgactgtaatggaggccatgtccagacaagacaccctacag
ccatttaataaaagtagcaaactatcccctgccactccacagcgatccatagtatttcca
cagactccgtgtagcagaaatttttctctcctggataagtctgggtccatcgagtcagga
tttaaccagatcagtgtcaaaaaccaacgagttcttgcaagcccaacttcaacaagccaa
ctaaattctgagttcagtgactggcatctttggaaatgtgggcaatgctttaagactttc
acccagcggatcctcttacagatgcatgtgtgtacgcagaaccccgacaggccctaccag
tgcggccactgctcccagtctttctcccagccctcagagctgaggaaccacgtcgttacg
cactccagtgacaggcctttcaagtgtggctactgcggacgtgcctttgctggtgccaca
acactcaacaatcacatccggacacacacgggggaaaagcccttcaagtgcgagaggtgt
gagaggagcttcacacaagccacccagctgagtcgacaccagaggatgcccaatgagtgc
aagccaataacagagagcacagaatcaattgaagtggattaa
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integrated database retrieval system
