Corvus cornix (hooded crow): 104690805
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Entry
104690805 CDS
T03546
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104690805 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccw03021
]
104690805 (POLR1A)
Enzymes [BR:
ccw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104690805 (POLR1A)
Transcription machinery [BR:
ccw03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104690805 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
104690805
NCBI-ProteinID:
XP_010400380
LinkDB
All DBs
Position
4:complement(67515967..67545973)
Genome browser
AA seq
1708 aa
AA seq
DB search
MRPPKVVPWRRLAGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDS
KEVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVYDLEIILNRFVEQCADATGSEIEEELNRHVQEMLQSSQIRDRCSN
VKNVCECRNKLIAQFWKAHMGSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYHKSGEEGI
LDEIAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLHYLFPGMDPHESSGFSPDMFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQCQPIKIAEEI
QTETGGDSEPLDRSVLATIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKIFPPAIMKPQRLWTGKQVVSTLLINIIPDNHAPLNLTGKAKIGGRAWIKGP
AKGFLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADHKRKKIIERSRQSGIEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMESYQAKQQFKAIKKWRARHQNS
VQREGGFLLFSQKKLASVKAQLPGGEMKNGRDPATLQLLKMWYELDEKKRRKYLKKTNKC
PDPSLGVWRPDTYFASVSETFENGVEGYISKWESENSRSYMQSALSADRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVFNTKKALKKVKQLKKQLTRVCLAEVLQKVDIEESLHVKHKLNKHHLYKIKFHFL
PHEDYREEKCVKPRQILHFMETRFFKVFLEAIKRKTTKMASFNEVSTRKTTRKDLDDDQD
KTLNSLEAVAEEEENIVDAEADEGDGDATEVKRRKNQEEEVDYESEEENGEENVNENPED
EEAESEKEEGTPGAEEDQNRAEGEDSQNPSFLSQTKKGKDRLLQSAEVRVSAVVESHPSI
QDYTFDTENELWCEVSLALPLTKVYFDLSSLLASLARSTVIHEVKGITRCLLNESTNKEG
EKEFVLHTEGINLTELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEVKDVFAVY
GIVVDPRHLSLVADYMCFEGIYKPLSRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaagtggtgccgtggcggcggctggccggggtgtccttcgggatgtac
acggccgaggagatcaggaaactgagtgtaaaacccataacaaaccctcagtacctggat
aatgtggggaatccggctgtaaatggactgtacgacttggccttgggacctccggactcc
aaagaagtgtgtgcgacttgcatgcagaacttcagcaactgccccggacactttggccat
atagaactgcctctgactgtctacaaccccctgttcttcgataaattataccttctaatc
cgaggatcttgtttgaattgtcacatgctgacatgtcctcgagccgtggttcacttactg
ctaagtcagctgaaggtgctagagaaggggctgcttcacgctgtctatgaccttgaaatc
attctgaacaggtttgtagagcaatgtgcagatgcaacaggctcagaaattgaagaagag
ttaaatcgccatgtccaggaaatgttacaaagctctcaaataagagatcggtgttctaat
gtcaaaaatgtgtgtgagtgtagaaataaactgatagcacagttctggaaagcgcacatg
ggttcaaagaaatgcccaaactgcaaatccaggagatcactggtgcgaaaggagcacaac
agcaagctgacagtaacctatccttccacagtgtaccataagtcaggagaggaaggcatt
ctggatgaaatagcaggtattgatgaaagccagttagggaagagaggatacctgacacca
atgactgccaaggaatacatcctggctctgtggaagaatgaaggtttctttctgcattat
ctcttccctgggatggatccccatgaaagttcaggattcagtccagacatgtttttttta
gatctacttgtggttccaccttcaaggtatcgtcccgtaaatcgcgttggagaccgcctg
ttcacaaatgggcagactgtgaacttgcaggctgtgatgaaagatgcccagttaatacgg
aagctcttggttttcatggcaaaagagcagtgtcagccaataaaaattgcagaagaaatt
caaacagagacaggaggggatagtgaacctctggaccgttctgtgctggcaacgattcct
ggacagagcattgcagataagctgtacaatgcttggatacgtctccagagccatgtcaac
attgtgtttgatagtgacatggacaagctgataacagaaaaataccctggtattcgtcag
ctgctggagaagaaggaagggctgttccgcaagcacatgatggggaagcgtgtggatttt
gctgctcgatccgtcatttgccctgatatgtacatcgggaccaatgagattggcatccct
atggtatttgctaccaaactgacttaccctcagccagtcactccctggaatgtcaaagag
ctgaggcaggctgtcattaatggtcccaaggtccaccctggggcctccatggtcattaac
gaggacgggtctcgcacggtgctgagtgccaccagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggcaccccagacagggctgaagattgtgtgtcgg
cacattaagaacggggatgtgctgttactgaaccgccagcccacgcttcacagaccttcc
atccaagctcaccgggcccgaatcctgcctggggagaaagtgctgaggcttcactatgcc
aactgcaaggcttacaatgctgactttgatggggatgaaatgaacgcccatttcccgcag
agcgagctgggcagagcggaagcctacaccttagccttcactgatgaacagtacctcgtg
ccaaaggatgggaagccgcttcctggcttgatccaagatcacatgatttctggagtcagc
atgacgatccggggttgctttttcaccagagagcaatacatggagcttgtgtaccgagga
ctgacagacaaaaaaggaagaattaaaatctttcctcctgccattatgaagccacagaga
ttatggacaggaaagcaggttgtttctacattgttaataaacatcattccagacaaccat
gctccactgaatttgactgggaaagcaaagattggtgggagagcctggataaagggacct
gcaaaaggatttctgaatcttgattcaatgtgtgaatctcaggttattatcagagatggg
gaattactgtgtggagtcttggacaaagctcactttggcagctctgcctatggcctggtc
cactgctgctatgagatctatgggggtgaaaccagtgggaaagtgctgacgtgtctgggg
cgcctcttcactgcttacctgcagctgtacaggggatttaccatggggattgaagatatt
ttggttaaacctgaagcagatcataaaagaaaaaaaatcattgaaaggtcgaggcagagt
ggtattgaagctgttagagctgctcttaatttgccagaaacagcatcatgtgaggaggtc
caagggaagtggcaggatgcccatctgtgcaaagaccagagggattttaacatggttgat
atgaagttcaaggaggaagtaaacaattacaacaatgaagttaacaaggtttgcatgcct
ctaggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtaaacacaatgcagatttcttgtttgctgggccagattgagttggaa
ggccgaagacccccactgatggcatctggcaaatcactgccatgtttccagccttatgat
ttttcccctagctcaggaggatttgtgaccggcagatttctcactgggatcagaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacatttggaagggctggtagttcag
tatgacctgactgtacgagacagtgatggcagcgtggtgcagtttctctatggagaagat
gggcttgatatccctaaaactcagttcttacaacctgagcagtttcctttcattgcagaa
aactacgaggtaatccagaagacaaaccatctggatgaagctttagcaaggatggagtct
taccaagctaagcagcagtttaaagccatcaaaaagtggagagccaggcaccaaaactct
gtgcaaagagaaggaggctttctgttgttttcccagaagaaactggcaagtgtgaaagca
cagcttccaggaggtgaaatgaagaatggaagagatcctgctactttacagttgttgaag
atgtggtatgagctcgatgagaagaaacgaaggaagtatctgaagaagacaaataagtgt
cctgacccaagccttggggtttggcgtccagatacctattttgcatctgtttcagaaaca
tttgaaaatggagttgaaggttatatcagtaaatgggaatctgagaacagccggagttac
atgcagtcagcactttctgctgatagattaaaggatctgttgtatttaaagtggcagcgt
tctctttgtgacccaggagaagctgtggggcttcttgcagctcagagtattggggaacct
tcgacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcaca
ttgggtattccaaggttgcgggaaatactgatggtggccagctcaaacattaaaacaccg
atgatgagtgttcctgtgttcaataccaagaaagctctcaagaaggtgaaacagcttaag
aaacagctcacgagagtatgcttagctgaggtcttgcagaaagtggacattgaggaatcc
ctgcatgtgaagcacaagctgaacaagcatcacctctacaaaatcaaattccatttcttg
ccccatgaggattaccgagaggagaagtgtgtgaagcccaggcagatcttgcacttcatg
gaaacaaggttctttaaagtttttctggaagcaattaaaagaaagactacaaagatggca
tcttttaatgaagtcagcactcggaagacaactcggaaggatttagatgatgaccaagac
aagacactgaatagtctggaagctgtagcagaggaggaagagaacattgttgatgcagaa
gctgatgaaggggatggtgatgccacagaagtaaaacggaggaagaaccaggaagaagag
gtcgattatgagagtgaagaagagaacggggaagaaaacgttaatgagaatccagaagat
gaagaggctgaatctgaaaaagaagaagggactcctggtgctgaagaggatcagaacaga
gcagagggtgaagattctcagaatccttcctttctgtctcagactaaaaaagggaaagat
cgattgcttcagtcagcagaggtgcgcgtgagcgctgttgtggagagccacccatccata
caggattacacgtttgacaccgaaaacgagctctggtgtgaggtttccttggcattgcca
ctgaccaaggtgtacttcgacctctcctcgctgctggcgtccctggcgcgcagcacggtg
atccacgaggtgaagggcatcacacggtgcctgctgaatgaaagtaccaacaaggaggga
gagaaggaattcgttctccacacagaagggataaacctgacagagctcttcagatactct
gatattttggacctgaacagactttattccaatgatatccatgccatggctaagaattac
ggaattgaatcagccctgagggtgattataaaggaagtaaaagatgtgtttgctgtatat
ggaattgtggtagaccctcgacacctttcacttgtggcagattatatgtgttttgaagga
atttataaaccactgagtcgttttggaattcagtccaactcctcccctctgcaacagatg
acgtttgaaaccagctacaaattcttgaaggaagcaacaatgatgggtgcccatgatgag
ctgcgatccccttcggcctgcctggtggttggaaaagttgtcaaaggagggactggcttg
tttgacctcaagcagcccctgacgtag
DBGET
integrated database retrieval system
