Corallococcus coralloides: COCOR_01377
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Entry
COCOR_01377 CDS
T01780
Symbol
rimO
Name
(GenBank) putative tRNA modifying protein
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ccx
Corallococcus coralloides
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccx03009
]
COCOR_01377 (rimO)
Enzymes [BR:
ccx01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
COCOR_01377 (rimO)
Ribosome biogenesis [BR:
ccx03009
]
Prokaryotic type
ribosomal protein modification factors
COCOR_01377 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
AFE10151
UniProt:
H8MTQ1
LinkDB
All DBs
Position
complement(1661847..1663274)
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AA seq
475 aa
AA seq
DB search
MEETKSLYMMTLGCPKNRVDSEVMLGTLRTRGYSLVQEASEAEVIVVNTCAFIGPAKQES
VDSILEMAELKKSGSCKTLVVTGCLSQRYGQELSQEMPEVDHFLGTSAYAQIGDLLAAEA
TPRQVIPDPDYIHNAETPRINSMPKYTAYLKISEGCDNACAFCIIPTLRGGQRSRTVQDI
VAEARNLADSGVQELNLVAQDLTAYGHDLPGKPKLHELLKELVKVDVKWIRLHYAYPRVF
PDELIDVIATEPKIAKYLDMPVQHASDKLLLSMKRGRNSEFLKKLLGKLRERVPNLVMRT
SLIVGLPGETEEDFELLKEFVKEQRFQRLGVFQYSDEENTAAFDLPNKVPAKTIERRWRE
VMAIQKRINREQNKKLVGQKLTVLVEGPSEESEHLLVGRHEGQAPEIDGQVYINDGLAYP
GEFVTVEVTEAHDYDLIARVVERPDPKQREHTPREAHPAPVPLKALARPPEPRPE
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagaccaagagcctgtacatgatgaccctcggctgcccgaagaaccgggtggac
tccgaggtgatgctgggcacgctgcgcacgcgtggctattcgctcgtgcaggaggcctcg
gaggcggaggtcatcgtggtcaacacgtgcgccttcatcggccctgcgaagcaggagtcc
gtggactccatcctggagatggcggagctgaagaagtcgggctcgtgcaagacgctcgtc
gtcaccggctgcctgtcccagcgctacggccaggagctgtcgcaggagatgccggaggtg
gaccacttcctgggcaccagcgcgtacgcccagattggtgacctgctggcggccgaggcc
acgccgcgccaggtgattccggatccggactacatccacaacgcggagacgccgcgcatc
aactcgatgccgaagtacacggcgtatctgaagatttcagagggctgcgacaacgcctgc
gcgttctgcatcatccccacgctgcgcggcggccagcgctcgcgcacggtgcaggacatc
gtggcggaggcgcggaacctggcggacagcggcgtgcaggagctgaacctcgtcgcgcag
gacctgacggcgtacgggcatgacctgcccggcaagccgaagctccacgagctgctcaag
gagctggtgaaggtggacgtgaagtggatccgcctgcactacgcctacccgcgcgtgttc
ccggacgagctcatcgacgtcatcgccaccgagccgaagatcgccaagtacctggacatg
ccggtgcagcacgccagcgacaagctgctgctgtccatgaagcgcggccgcaactcggag
ttcctcaagaagctgctgggcaagctgcgcgagcgcgtgccgaacctggtgatgcgcacc
tcgctcatcgtcggcctgccgggtgagacggaggaggacttcgagctcctgaaggagttc
gtgaaggagcagcgcttccagcgcctgggcgtgttccagtactcggacgaggagaacacc
gccgcgttcgacctgccgaacaaggtcccggcgaagaccatcgagcgccgctggcgcgag
gtgatggccatccagaagcgcatcaaccgcgagcagaacaagaagctcgtgggccagaag
ctcaccgtgctggtggagggccccagcgaggagtccgagcacctgctggtgggccgccac
gagggccaggcgccggaaatcgacgggcaggtctacatcaacgacggcctggcgtacccg
ggcgagttcgtcaccgtggaggtgacggaagcgcacgactacgacctcatcgcccgcgtg
gtggagcgtccggatccgaagcagcgcgagcacaccccgcgcgaggcccatcccgcgccc
gtgccgctgaaggcgctggcgcgtccgccggagccgcggccggagtag
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integrated database retrieval system
