Caldicellulosiruptor diazotrophicus: CaldiYA01_15190
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Entry
CaldiYA01_15190 CDS
T08057
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
cdia
Caldicellulosiruptor diazotrophicus
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cdia03009
]
CaldiYA01_15190 (rimO)
Enzymes [BR:
cdia01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
CaldiYA01_15190 (rimO)
Ribosome biogenesis [BR:
cdia03009
]
Prokaryotic type
ribosomal protein modification factors
CaldiYA01_15190 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BCS81559
LinkDB
All DBs
Position
complement(1562303..1563625)
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AA seq
440 aa
AA seq
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MIKVGFVSLGCNKNLVDSEIMMGACVGAGFEITPDAEDADVIVVNTCGFINDAKQESIDT
ILDMAEYKNKKCKFLVVTGCLAQRYKDEILDQMPEVDAILGVKEMLKLPEVIKDLYEGKQ
KIKLFDDTSSFVYNSSMARVIATPSYYAYIKIAEGCNNRCSYCSIPLIRGKYTSRPLEDI
VKEANELAEKGYKEIILTAQDTTKYGLDLYGKKMLPALLEELEKIEKIKWIRFLYSYPED
VDENLIEVVKSSSKIVNYFDIPIQHINDRILKLMNRKTTKEGIKRLIEKIRQNFDEVVIR
TTVLVGFPTETDEEFEELCSFLKWAEFDRLGAFMYSQEEGTIASQLPQVDDEVKQRRYEK
VLNIQRKISKRQNKKRVGREYEVVIEAKDKNNFYIGRSQFEAPEVDGKVLVFSQNKLTVG
KFVKVKILDAFEYDLVGEII
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
ttgataaaggttgggtttgtctcactggggtgcaacaaaaaccttgttgacagtgaaata
atgatgggcgcatgtgtcggggcaggatttgaaataaccccagatgcagaggatgccgat
gtgattgttgtaaacacatgtggttttataaacgatgcaaaacaggagtccatagatact
atattagatatggctgaatataagaacaaaaagtgcaaatttttagtagtaacagggtgt
ttagcgcaaagatacaaagatgagatattagatcagatgccggaggttgatgcaatactt
ggtgtgaaagaaatgctaaaactgcctgaggttataaaagatttgtatgaaggtaagcag
aagataaaactgttcgatgatacttcttcgtttgtgtacaatagttcaatggcaagagtg
attgctacacccagttactatgcctacataaagatagcagaagggtgtaacaacagatgt
tcttattgctccataccacttattagaggcaagtatacaagcagaccacttgaagatatc
gtgaaggaagcaaacgaattagcagagaagggatataaagagattatcctcacagctcag
gatactacaaagtatggtttggatttgtacggcaagaagatgttacctgctttgcttgaa
gaacttgaaaagattgaaaaaatcaagtggataagatttttgtactcttaccctgaggat
gtggatgaaaatcttattgaggtggtaaaatcttcttctaaaatagttaattattttgac
attccaatccagcatataaatgatagaatattaaaactcatgaacagaaaaacaacaaaa
gaaggtataaaaagactgatagagaagataagacaaaattttgatgaggttgtaattagg
acaacagttttggttgggtttcctacagaaactgatgaggaatttgaagaactgtgtagc
tttttaaaatgggctgagtttgacaggcttggtgcttttatgtattctcaagaggaagga
acaattgcttcgcagcttcctcaggttgacgatgaggtgaaacaaagaagatatgaaaag
gttttgaatattcagagaaaaatttctaaaaggcagaacaaaaagcgagttggcagagaa
tacgaagtggttatagaggcaaaagataaaaacaacttttacattggaaggagccagttt
gaagcaccagaagttgacggaaaagttttggtgttttctcaaaataaactgacagttggc
aagtttgtcaaggtaaagatacttgatgcgtttgagtatgatttggtaggagagataatt
tga
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