Clostridioides difficile R20291: CDR20291_1167
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Entry
CDR20291_1167 CDS
T00998
Name
(GenBank) radical SAM-superfamily protein
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
cdl
Clostridioides difficile R20291
Brite
KEGG Orthology (KO) [BR:
cdl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cdl03009
]
CDR20291_1167
Enzymes [BR:
cdl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
CDR20291_1167
Ribosome biogenesis [BR:
cdl03009
]
Prokaryotic type
ribosomal protein modification factors
CDR20291_1167
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
PilO
Imm70
NAGidase
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
CBE03514
UniProt:
A0A9R0BJJ3
LinkDB
All DBs
Position
1393819..1395153
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AA seq
444 aa
AA seq
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MLKIALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDT
IINFSELKKTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSEMH
QIVSLNDIEFVFNEDLPRYISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSRKFEDII
KEAKKLAESGVKELVVIAQDTTKYGFDLYGKERLSELLEELAKIDGFKWIRVMYSYPESI
TEELIQVIKKYDNICSYFDMPIQHASNNILKLMNRKTTKEDILNKINLIRSNIPDAILRT
TIIVGFPGETEDDFKQLVDFVEEVKFDRLGAFAYSREEDTPADRLPNHIDEEVKIQRRDT
LMMIQQKISEELNDKKIGKTYEVLIEEQIEDNVYTGRTQGDAEEIDSIVYVKSVDNLEVG
EFVSVQINDAMEYDLMGDVLYELA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaatagcattggaatcattaggatgctcaaaaaatttagtagatgcagaaata
atgatgggaattttaaataacaaaggctataaattaattggagattttgaagaagctgat
gtaattatagtaaatacatgtgggtttatagagtcagctaaacaagaatctatagatacg
ataataaacttttcagagttaaaaaaaactggcaatttaaagttgttgatagtaacaggg
tgtctagcccaaagatattctgaagaattaaaaactgaaattcctgaaatagatgctata
gtaggaacaggaagctatcaaaatatagataaaatacttaaagaattaagtgaaatgcat
caaattgtaagccttaatgatatagagtttgtatttaatgaagatttaccaagatatata
tctacacctagctatatggcctatttaaaaattggagaaggatgctccaataattgtact
tattgtataataccaaaactaagaggtaaatatagaagtagaaaatttgaagatataatt
aaagaagctaagaaattagctgaatctggagtaaaagaacttgtggttatagcacaagat
acgacaaagtatggttttgatttatatggaaaagaaagattatcagaacttttagaagaa
cttgcaaaaatagatggatttaagtggataagggttatgtattcatatccagaatctata
acagaggaattgatacaagttataaagaaatatgataatatatgtagttactttgatatg
ccaatacagcatgcaagtaacaatattttaaaattaatgaatagaaaaactactaaagaa
gatatattaaataaaatcaatctgataagaagtaatataccagatgctatacttagaact
acgataatagtagggtttcctggtgaaacagaagatgacttcaaacaacttgtggacttt
gttgaagaggttaaatttgatagacttggtgcatttgcatattcaagagaagaagataca
ccagcagatagattgccaaaccatatagatgaagaagtaaaaatacaaagaagagatact
ttaatgatgattcaacaaaaaatatctgaagaacttaatgacaaaaagataggaaaaact
tatgaggtgttaatagaagaacagatagaagataatgtatatacaggaagaacacaaggt
gatgcggaagaaattgacagtatagtgtatgtaaaaagtgtagacaatcttgaagtagga
gaatttgtaagtgttcaaataaatgatgcaatggaatacgatttaatgggagatgtttta
tatgaacttgcctaa
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