Dickeya fangzhongdai ND14b: LH89_03020
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Entry
LH89_03020 CDS
T03347
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ced03009
]
LH89_03020 (rimO)
Enzymes [BR:
ced01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LH89_03020 (rimO)
Ribosome biogenesis [BR:
ced03009
]
Prokaryotic type
ribosomal protein modification factors
LH89_03020 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
NTPase_1
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
AIR68232
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Position
694861..696171
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AA seq
436 aa
AA seq
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MSRKIGFVSLGCPKNLVDSERILTELRTEGYQVVPSYNDADLVIVNTCGFIDSAVQESLE
AIGEALNENGKVIVTGCLGAKENQIREVHPKVLEITGPHSYEQVLNHVHHYVPKPEHDPF
TSLIPAQGVKLTPRHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPIGSVLDEAKRLADAG
VKELLVISQDTSAYGADVKHRTGFWNGQPVKTSMVSLCEQLATLGLWVRLHYVYPYPHVD
DIIPLMAAGKVLPYLDIPLQHASPKILKLMKRPGAVERTLERIKRWREICPELTLRSTFI
VGFPGETEEDFQMLLDFLQEAQLDRVGCFRYSPVEGAAANDLPDQVSEAVKEERYHRFMQ
IQQQISSQRLQAKVGRELKVLIDEVDEEGAIGRSMADAPEIDGAVYLNGEKRVKVGDLVT
VKIEHADEYDLWGSLV
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
ctgtcccgcaagattggctttgtcagcctcggttgcccgaaaaacctggtggattcggag
cgcatcctgaccgaactgcgtaccgaaggatatcaggtggtgccgagttacaacgacgcc
gatctggtgatcgtcaatacctgcggtttcatcgacagcgcggtgcaggaatcgctggaa
gcgattggcgaagcgctcaacgaaaacggcaaggtcattgtgaccggctgtctgggtgcg
aaagagaatcagatccgcgaagtgcaccccaaagtgctggagatcaccggcccgcacagc
tacgagcaggtgctgaaccatgtgcaccactacgtccccaagccggaacacgacccgttc
accagcctgatcccggcgcagggcgtgaaactgacgccgcgccactacgcctatctgaaa
atttccgaaggctgcgatcaccgttgcactttctgcatcattccgtcgatgcgcggcgat
ttggacagccgtccgatcggttcagtgctggatgaagccaaacggctggcggatgcgggc
gtgaaggaactgctggttatctcccaggacacgtccgcctatggcgccgacgtcaaacac
cgcaccgggttctggaacgggcagccggtgaaaaccagcatggtcagcctgtgcgagcaa
ctggcgacgctggggctgtgggtgcgcctgcactatgtttacccctacccgcacgtggac
gacatcattccgctgatggcggccggcaaagtgctgccgtatctggatattccgctgcaa
catgccagcccgaaaatcctcaagctgatgaagcgccccggtgcggtagagcgaacgctg
gaacgcatcaagcgctggcgtgagatttgcccggagttgacgctgcgttcaacctttatt
gtcggcttccccggcgaaaccgaagaagatttccagatgctgctggatttcctgcaggaa
gcgcagttagaccgcgtgggctgtttccgttacagcccggtagaaggcgcggcggcaaac
gacctgccggatcaggtgtcggaagcggtgaaagaagagcgttatcaccgtttcatgcag
atacaacaacagatttccagccagcgtctgcaagccaaagtgggccgcgaactgaaagtg
ctgatcgatgaagtcgacgaagaaggcgctatcggccgcagcatggcggatgcgccggag
atcgacggcgcggtctatctgaacggcgaaaaacgagtcaaagtgggcgacctggtcacc
gtgaaaatcgaacacgccgacgaatacgacctgtggggcagtctggtctga
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